Detailed information NTG0552948

Bioinformatically predicted

Overview

• Name: comYF
• Type: Machinery gene
• Locus tag: J7U23_RS09010
• Genome accession: NZ_CP072435
• Coordinates: 1746108..1746545 (-)
• Length: 145 a.a.
• NCBI ID: WP_082309153.1
• Uniprot ID: -
• Organism: Streptococcus thermophilus strain S24736
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1741108..1751545

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
J7U23_RS08975 (J7U23_08870)	-	1741166..1741828 (-)	663	WP_011227583.1	CPBP family intramembrane glutamic endopeptidase	-
J7U23_RS08980 (J7U23_08875)	-	1741931..1742224 (-)	294	WP_232085688.1	hypothetical protein	-
J7U23_RS08985	-	1742449..1742874 (-)	426	WP_111679733.1	CPBP family intramembrane glutamic endopeptidase	-
J7U23_RS08990 (J7U23_08885)	-	1743117..1743314 (-)	198	WP_002885716.1	helix-turn-helix transcriptional regulator	-
J7U23_RS08995 (J7U23_08890)	-	1743563..1744756 (-)	1194	WP_084831204.1	acetate kinase	-
J7U23_RS09000 (J7U23_08895)	comYH	1744812..1745768 (-)	957	WP_011226622.1	class I SAM-dependent methyltransferase	Machinery gene
J7U23_RS09005 (J7U23_08900)	comGG	1745813..1746130 (-)	318	WP_082309152.1	competence type IV pilus minor pilin ComGG	-
J7U23_RS09010 (J7U23_08905)	comYF	1746108..1746545 (-)	438	WP_082309153.1	competence type IV pilus minor pilin ComGF	Machinery gene
J7U23_RS09015 (J7U23_08910)	comGE	1746529..1746822 (-)	294	WP_011226625.1	competence type IV pilus minor pilin ComGE	-
J7U23_RS09020 (J7U23_08915)	comYD	1746794..1747222 (-)	429	WP_011226626.1	competence type IV pilus minor pilin ComGD	Machinery gene
J7U23_RS09025 (J7U23_08920)	comYC	1747182..1747508 (-)	327	WP_002946126.1	competence type IV pilus major pilin ComGC	Machinery gene
J7U23_RS09030 (J7U23_08925)	comYB	1747505..1748605 (-)	1101	WP_271307389.1	competence type IV pilus assembly protein ComGB	Machinery gene
J7U23_RS09035 (J7U23_08930)	comYA	1748487..1749428 (-)	942	WP_372589905.1	competence type IV pilus ATPase ComGA	Machinery gene
J7U23_RS09040 (J7U23_08935)	-	1749509..1749871 (-)	363	WP_372433446.1	DUF1033 family protein	-

Sequence

Protein

• Length: 145 a.a.
• Molecular weight: 16423.93 Da
• Isoelectric Point: 8.9531

>NTDB_id=552948 J7U23_RS09010 WP_082309153.1 1746108..1746545(-) (comYF) [Streptococcus thermophilus strain S24736]
MYLSSKLRAFTLLECLVALLVIAGSVQVYQGLTTVLVSNVKQVRQQENQDWLLFVQQMEAELEGCQLVKVEGNKLYVKQD
NQYLAFGLSSASDFRKTNADGRGYQPMLFDVKSSKVSQKNQIVTIQVTLKNELQRSFVYAFEKTG

Nucleotide

• Length: 438 bp

>NTDB_id=552948 J7U23_RS09010 WP_082309153.1 1746108..1746545(-) (comYF) [Streptococcus thermophilus strain S24736]
ATGTATCTAAGCAGTAAGCTGCGTGCCTTTACCCTCTTGGAATGTCTAGTGGCCTTGTTGGTCATTGCTGGCTCAGTTCA
AGTTTATCAAGGGTTAACCACTGTACTTGTTAGTAATGTTAAGCAGGTAAGACAACAAGAAAACCAAGATTGGCTTCTAT
TTGTTCAACAAATGGAGGCAGAATTAGAAGGATGTCAGTTGGTCAAGGTAGAGGGGAACAAACTCTATGTCAAGCAGGAT
AATCAATACTTGGCTTTTGGTCTTTCAAGTGCCTCTGATTTTCGAAAAACAAATGCTGATGGTCGAGGTTATCAACCAAT
GCTTTTCGATGTCAAATCTAGTAAGGTAAGTCAAAAGAACCAGATAGTTACCATCCAAGTGACTCTTAAAAATGAACTAC
AAAGGAGTTTTGTTTATGCTTTTGAAAAAACAGGTTAG

Domains

Predicted by InterproScan.

• Putative Competence protein ComGF (ComGF) (39-134)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comYF	Streptococcus mutans UA140	58.156	97.241	0.566
comYF	Streptococcus mutans UA159	57.447	97.241	0.559
comGF/cglF	Streptococcus pneumoniae D39	48.571	96.552	0.469
comGF/cglF	Streptococcus pneumoniae Rx1	48.571	96.552	0.469
comGF/cglF	Streptococcus pneumoniae R6	48.571	96.552	0.469
comGF/cglF	Streptococcus pneumoniae TIGR4	48.571	96.552	0.469
comGF/cglF	Streptococcus mitis NCTC 12261	47.518	97.241	0.462
comGF/cglF	Streptococcus mitis SK321	46.099	97.241	0.448
comGF	Lactococcus lactis subsp. cremoris KW2	45.324	95.862	0.434