Detailed information    

insolico Bioinformatically predicted

Overview

Name   recX   Type   Regulator
Locus tag   LV622_RS09460 Genome accession   NZ_CP090001
Coordinates   1925277..1926095 (-) Length   272 a.a.
NCBI ID   WP_001124419.1    Uniprot ID   Q8NVU3
Organism   Staphylococcus aureus strain RN6390     
Function   repressor of recA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1920277..1931095
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LV622_RS09440 (LV622_09440) - 1921370..1922347 (+) 978 WP_000379098.1 metal-dependent hydrolase -
  LV622_RS09445 (LV622_09445) - 1922608..1923444 (-) 837 WP_000886468.1 membrane protein -
  LV622_RS09450 (LV622_09450) - 1923453..1924970 (-) 1518 WP_000535834.1 ABC transporter ATP-binding protein -
  LV622_RS09455 (LV622_09455) - 1924985..1925299 (-) 315 WP_000435806.1 YfhH family protein -
  LV622_RS09460 (LV622_09460) recX 1925277..1926095 (-) 819 WP_001124419.1 recombination regulator RecX Regulator
  LV622_RS09465 (LV622_09465) sgtB 1926356..1927165 (-) 810 WP_000830380.1 monofunctional peptidoglycan glycosyltransferase SgtB -
  LV622_RS09470 (LV622_09470) - 1927506..1928021 (-) 516 WP_000163283.1 type 1 glutamine amidotransferase domain-containing protein -
  LV622_RS09475 (LV622_09475) - 1928152..1928313 (-) 162 WP_001005407.1 SE1561 family protein -
  LV622_RS09480 (LV622_09480) yfkAB 1928537..1929688 (+) 1152 WP_001089613.1 radical SAM/CxCxxxxC motif protein YfkAB -
  LV622_RS09485 (LV622_09485) - 1929948..1930478 (-) 531 WP_000184383.1 acyl-CoA thioesterase -

Sequence

Protein


Download         Length: 272 a.a.        Molecular weight: 32241.06 Da        Isoelectric Point: 5.9211

>NTDB_id=552949 LV622_RS09460 WP_001124419.1 1925277..1926095(-) (recX) [Staphylococcus aureus strain RN6390]
MPKITKIEVQKKNKERFNLFLDEQFEMGIDIDTLVKFNLKKGQQLEAADMAEIQKYDHYRIGLNKAIQYLSYKKRTEKEV
IQYLQKEEISEQAISEVIEYCYREKLIDHQDYAESLKNTMIRTTDKGPKIYQQKLYQLGIEPNIIEIFTELYREQQELDD
IIQIAEKISKTKKGPQNKVKEKVMQSLIQKGFEMETIHAVLNEMDFTQDEAVLDDLLQRDLEKIYNKNRKKYTQQKLISK
TIEGLMRKGYKYDKIKAKLEESGIADGTEEIE

Nucleotide


Download         Length: 819 bp        

>NTDB_id=552949 LV622_RS09460 WP_001124419.1 1925277..1926095(-) (recX) [Staphylococcus aureus strain RN6390]
GTGCCGAAGATTACTAAAATAGAAGTTCAAAAGAAAAACAAAGAACGGTTTAATCTTTTTTTAGACGAACAATTTGAAAT
GGGTATAGATATTGATACATTAGTCAAATTTAATTTAAAAAAAGGGCAACAACTTGAAGCTGCTGACATGGCAGAGATTC
AAAAGTATGATCATTATCGCATAGGTTTAAATAAAGCAATCCAATATTTATCATATAAAAAGAGAACTGAAAAAGAAGTT
ATACAATATTTACAAAAAGAAGAGATATCAGAGCAAGCGATTTCTGAAGTGATTGAATATTGTTATCGCGAAAAGTTAAT
CGACCATCAAGATTATGCGGAAAGTTTAAAAAATACAATGATTCGCACGACAGATAAAGGACCTAAAATTTATCAACAAA
AACTATATCAACTTGGTATAGAACCAAATATCATTGAAATATTTACAGAACTTTATAGAGAACAACAGGAACTTGATGAT
ATTATCCAAATTGCTGAAAAAATATCTAAAACAAAAAAAGGGCCACAAAATAAAGTTAAAGAAAAAGTAATGCAATCTTT
AATTCAAAAAGGGTTTGAAATGGAAACCATTCATGCTGTATTGAATGAAATGGATTTTACACAAGATGAAGCGGTTTTAG
ACGATTTATTACAACGAGATTTAGAAAAAATTTATAATAAAAATCGAAAGAAGTACACGCAACAGAAATTAATTTCAAAA
ACTATCGAAGGCCTTATGAGAAAAGGATATAAATATGATAAAATTAAAGCTAAATTAGAAGAAAGTGGTATTGCCGATGG
AACAGAAGAAATTGAGTGA

Domains

Predicted by InterProScan.

RecX family (RecX_HTH2)

(84-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q8NVU3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recX Staphylococcus aureus strain ATCC 12600

100

100

1