Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYH   Type   Machinery gene
Locus tag   J7U23_RS09000 Genome accession   NZ_CP072435
Coordinates   1744812..1745768 (-) Length   318 a.a.
NCBI ID   WP_011226622.1    Uniprot ID   A0A8D6XRE9
Organism   Streptococcus thermophilus strain S24736     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1739812..1750768
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J7U23_RS08970 (J7U23_08865) proC 1740366..1741136 (+) 771 WP_011226616.1 pyrroline-5-carboxylate reductase -
  J7U23_RS08975 (J7U23_08870) - 1741166..1741828 (-) 663 WP_011227583.1 CPBP family intramembrane glutamic endopeptidase -
  J7U23_RS08980 (J7U23_08875) - 1741931..1742224 (-) 294 WP_232085688.1 hypothetical protein -
  J7U23_RS08985 - 1742449..1742874 (-) 426 WP_111679733.1 CPBP family intramembrane glutamic endopeptidase -
  J7U23_RS08990 (J7U23_08885) - 1743117..1743314 (-) 198 WP_002885716.1 helix-turn-helix transcriptional regulator -
  J7U23_RS08995 (J7U23_08890) - 1743563..1744756 (-) 1194 WP_084831204.1 acetate kinase -
  J7U23_RS09000 (J7U23_08895) comYH 1744812..1745768 (-) 957 WP_011226622.1 class I SAM-dependent methyltransferase Machinery gene
  J7U23_RS09005 (J7U23_08900) comGG 1745813..1746130 (-) 318 WP_082309152.1 competence type IV pilus minor pilin ComGG -
  J7U23_RS09010 (J7U23_08905) comYF 1746108..1746545 (-) 438 WP_082309153.1 competence type IV pilus minor pilin ComGF Machinery gene
  J7U23_RS09015 (J7U23_08910) comGE 1746529..1746822 (-) 294 WP_011226625.1 competence type IV pilus minor pilin ComGE -
  J7U23_RS09020 (J7U23_08915) comYD 1746794..1747222 (-) 429 WP_011226626.1 competence type IV pilus minor pilin ComGD Machinery gene
  J7U23_RS09025 (J7U23_08920) comYC 1747182..1747508 (-) 327 WP_002946126.1 competence type IV pilus major pilin ComGC Machinery gene
  J7U23_RS09030 (J7U23_08925) comYB 1747505..1748605 (-) 1101 WP_271307389.1 competence type IV pilus assembly protein ComGB Machinery gene
  J7U23_RS09035 (J7U23_08930) comYA 1748487..1749428 (-) 942 WP_372589905.1 competence type IV pilus ATPase ComGA Machinery gene
  J7U23_RS09040 (J7U23_08935) - 1749509..1749871 (-) 363 WP_372433446.1 DUF1033 family protein -

Sequence

Protein


Download         Length: 318 a.a.        Molecular weight: 35857.00 Da        Isoelectric Point: 4.7123

>NTDB_id=552947 J7U23_RS09000 WP_011226622.1 1744812..1745768(-) (comYH) [Streptococcus thermophilus strain S24736]
MNFEAIETAFELLLENVQTIENDLGTHAYDALIEQNSYYLGAEVANELIIKNNEKLRALNLSKEEWRRAFQFLFIKLGQL
EALQANHQFTPDAIGFIILYLLEGLTQEKQLDILEIGSGTGNLAETLLNNSQKTLNYMGMEVDDLLIDLSASIAEVVNSV
AVYIQGDAVRPHILKESNVIISDLPIGYYPNDEIASRFKVAATGEHTYAHHLLMEQSLKYLKKDGIAIFLAPTNLLTSPQ
SDLLKKWLSGYADIIAVITLPEAAFGNKHNMKSIFVLKKQTKNAPETFVYPLSDLQNPRILKDFTENFQKWKSDNSIF

Nucleotide


Download         Length: 957 bp        

>NTDB_id=552947 J7U23_RS09000 WP_011226622.1 1744812..1745768(-) (comYH) [Streptococcus thermophilus strain S24736]
ATGAATTTTGAAGCAATTGAGACAGCTTTTGAGCTGTTGTTAGAAAATGTCCAAACTATTGAAAATGATCTTGGAACCCA
TGCTTACGATGCACTTATTGAGCAAAATTCCTATTATTTGGGGGCTGAGGTTGCTAATGAGCTCATCATCAAAAACAACG
AGAAATTACGGGCGCTTAATCTAAGTAAAGAGGAGTGGCGTCGTGCTTTTCAGTTTTTGTTTATCAAACTAGGGCAATTG
GAAGCTTTACAAGCCAATCACCAATTTACACCAGATGCTATCGGATTTATCATTCTGTACTTGCTCGAAGGTTTGACCCA
GGAAAAACAATTAGATATCTTGGAGATTGGTTCGGGAACAGGAAACTTGGCTGAAACTCTTCTAAATAATAGTCAGAAAA
CCCTTAATTATATGGGGATGGAAGTTGATGATCTTCTTATCGATTTGTCAGCTAGTATTGCTGAGGTGGTGAATTCAGTA
GCGGTTTATATCCAAGGGGATGCTGTTCGACCACATATTCTCAAAGAGAGCAACGTTATTATCAGCGATTTACCTATAGG
TTACTACCCTAATGATGAGATTGCGAGTCGTTTCAAGGTGGCAGCAACTGGCGAACACACTTATGCCCATCATCTTCTTA
TGGAGCAATCGCTTAAGTATTTGAAGAAAGATGGTATTGCTATTTTTTTGGCACCAACCAATCTTTTGACAAGCCCTCAA
AGTGATCTGCTTAAGAAGTGGTTATCAGGATATGCTGATATTATTGCTGTTATTACTCTTCCAGAAGCAGCTTTTGGCAA
TAAACATAACATGAAGTCTATCTTTGTGCTAAAAAAACAAACTAAAAATGCTCCTGAGACCTTCGTTTACCCACTTAGCG
ATTTGCAAAATCCAAGGATCCTCAAGGATTTTACAGAGAATTTCCAAAAATGGAAATCAGATAATTCCATTTTTTAG

Domains

Predicted by InterproScan.

N-6 DNA Methylase (N6_Mtase)

(69-291)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYH Streptococcus mutans UA159

68.889

99.057

0.682
  comYH Streptococcus mutans UA140

68.889

99.057

0.682