Detailed information NTG0552323

Bioinformatically predicted

Overview

• Name: pilC
• Type: Machinery gene
• Locus tag: J4T80_RS15925
• Genome accession: NZ_CP072396
• Coordinates: 3691907..3693163 (+)
• Length: 418 a.a.
• NCBI ID: WP_007973903.1
• Uniprot ID: A0AB34Q195
• Organism: Xanthomonas citri pv. fuscans strain 6165R(delta)tal22B
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
IS/Tn	3690030..3691010	3691907..3693163	flank	897

Gene organization within MGE regions

Location: 3690030..3693163

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
J4T80_RS15915 (J4T80_15915)	-	3690030..3691010 (-)	981	WP_007975311.1	IS5-like element ISXfu2 family transposase	-
J4T80_RS15920 (J4T80_15920)	pilE	3691140..3691580 (-)	441	WP_005934296.1	pilin	Machinery gene
J4T80_RS15925 (J4T80_15925)	pilC	3691907..3693163 (+)	1257	WP_007973903.1	type II secretion system F family protein	Machinery gene

Sequence

Protein

• Length: 418 a.a.
• Molecular weight: 45939.35 Da
• Isoelectric Point: 10.3003

>NTDB_id=552323 J4T80_RS15925 WP_007973903.1 3691907..3693163(+) (pilC) [Xanthomonas citri pv. fuscans strain 6165R(delta)tal22B]
MSVARSSIKKQPVDRNVSEMIPFVWEGTDKRGVKMKGEQQARNANMLRAELRRQGITPTVVKTKPKPLFGAAGKKISPKD
IAFFSRQMATMMKSGVPIVGALEIIGEGHKNPRMKKMVGQIRADIEGGSSLYEAISRHPVQFDDLYRNLVRAGEGAGVLE
TVLDTVANYKENIEALKGKIKKALFYPAMVMAVAIIVSGILLVFVVPQFEDVFKGFGAELPAFTQMIVAASRFMVSYWWF
MLLASVAAIAGFIFAYKRSPRMRHGMDRLVLKFPVIGQIMHNSSIARFARTTAVTFKAGVPLVEALSIVAGATGNKVYEE
AVLRMRDDVSVGYPVNMAMKQVNLFPHMVIQMTSIGEEAGALDAMLFKVAEYFEQEVNNAVDALSSLLEPLIMVFIGTIV
GGMVIGMYLPIFKLGSVV

Nucleotide

• Length: 1257 bp

>NTDB_id=552323 J4T80_RS15925 WP_007973903.1 3691907..3693163(+) (pilC) [Xanthomonas citri pv. fuscans strain 6165R(delta)tal22B]
ATGTCAGTCGCTCGCAGCAGCATCAAGAAGCAACCGGTAGACCGAAATGTCAGTGAAATGATCCCGTTTGTCTGGGAAGG
CACAGACAAGCGTGGCGTCAAGATGAAGGGGGAGCAGCAGGCCCGCAATGCAAACATGCTGCGTGCAGAGCTTCGTCGCC
AGGGAATCACTCCTACAGTTGTAAAGACTAAACCAAAACCGCTTTTTGGCGCTGCGGGCAAAAAGATTTCACCAAAAGAC
ATCGCATTCTTCAGCCGCCAGATGGCAACGATGATGAAGTCCGGAGTTCCCATAGTTGGCGCACTTGAAATTATCGGCGA
AGGGCACAAAAACCCTCGCATGAAAAAAATGGTTGGTCAGATTCGAGCTGATATCGAAGGAGGTTCTTCACTTTACGAAG
CTATTTCTCGACATCCAGTCCAGTTTGACGACTTGTATCGAAATCTGGTGCGCGCGGGCGAGGGTGCTGGCGTCTTGGAA
ACTGTCCTAGATACAGTTGCGAACTATAAAGAAAATATTGAGGCCCTTAAGGGCAAAATCAAAAAAGCCCTGTTTTATCC
TGCCATGGTAATGGCCGTCGCAATTATTGTTAGCGGCATACTATTAGTTTTCGTGGTCCCTCAATTTGAAGATGTATTCA
AAGGTTTTGGAGCAGAACTTCCCGCTTTTACGCAAATGATTGTAGCAGCATCTCGTTTCATGGTGTCTTATTGGTGGTTC
ATGCTACTAGCAAGTGTCGCAGCGATAGCTGGCTTCATCTTTGCCTACAAACGCTCACCGCGCATGCGCCACGGAATGGA
CAGGCTTGTTTTGAAGTTTCCAGTGATCGGGCAGATTATGCACAATAGCTCGATTGCTCGATTTGCCCGAACCACCGCGG
TCACGTTTAAAGCTGGCGTACCCCTTGTAGAAGCCCTAAGTATTGTTGCCGGTGCGACTGGCAATAAGGTATATGAGGAA
GCTGTGCTGCGGATGCGCGACGACGTCTCTGTAGGATACCCCGTGAACATGGCCATGAAGCAAGTAAACCTGTTCCCGCA
TATGGTGATTCAAATGACATCCATTGGCGAGGAAGCGGGCGCACTTGATGCAATGCTATTCAAAGTCGCGGAGTATTTCG
AGCAGGAAGTAAATAATGCCGTGGATGCGCTAAGCAGCCTATTGGAGCCGTTGATCATGGTATTCATCGGTACAATTGTT
GGCGGCATGGTGATCGGCATGTATCTTCCGATTTTCAAACTTGGCTCGGTGGTATAA

Domains

Predicted by InterproScan.

• Type II secretion system (T2SS), protein F (T2SSF) (84-207)

• Type II secretion system (T2SS), protein F (T2SSF) (288-410)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilC	Acinetobacter baylyi ADP1	53.102	96.411	0.512
pilC	Pseudomonas stutzeri DSM 10701	53.283	94.737	0.505
pilC	Acinetobacter baumannii D1279779	52.109	96.411	0.502
pilC	Legionella pneumophila strain ERS1305867	51.478	97.129	0.5
pilG	Neisseria gonorrhoeae MS11	45.5	95.694	0.435
pilG	Neisseria meningitidis 44/76-A	45	95.694	0.431
pilC	Vibrio cholerae strain A1552	42.677	94.737	0.404
pilC	Vibrio campbellii strain DS40M4	39.646	94.737	0.376
pilC	Thermus thermophilus HB27	37.94	95.215	0.361