Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/celA/cilE   Type   Machinery gene
Locus tag   J4854_RS03665 Genome accession   NZ_CP072329
Coordinates   701917..702585 (+) Length   222 a.a.
NCBI ID   WP_200772274.1    Uniprot ID   -
Organism   Streptococcus lactarius strain CCUG 66490     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 696917..707585
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J4854_RS03645 (J4854_03645) - 697516..697779 (-) 264 WP_187539393.1 GIY-YIG nuclease family protein -
  J4854_RS03650 (J4854_03650) - 697769..698515 (-) 747 WP_200772271.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  J4854_RS03655 (J4854_03655) - 698595..700934 (-) 2340 WP_200772272.1 HAD-IC family P-type ATPase -
  J4854_RS03660 (J4854_03660) - 701104..701850 (+) 747 WP_200772273.1 lysophospholipid acyltransferase family protein -
  J4854_RS03665 (J4854_03665) comEA/celA/cilE 701917..702585 (+) 669 WP_200772274.1 helix-hairpin-helix domain-containing protein Machinery gene
  J4854_RS03670 (J4854_03670) comEC/celB 702566..704812 (+) 2247 WP_200772275.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  J4854_RS03675 (J4854_03675) - 704888..705490 (+) 603 WP_200772276.1 DUF805 domain-containing protein -
  J4854_RS03680 (J4854_03680) holA 705514..706548 (+) 1035 WP_200772277.1 DNA polymerase III subunit delta -
  J4854_RS03685 (J4854_03685) sodA 706637..707242 (+) 606 WP_200772278.1 superoxide dismutase SodA -

Sequence

Protein


Download         Length: 222 a.a.        Molecular weight: 23699.64 Da        Isoelectric Point: 5.8846

>NTDB_id=552044 J4854_RS03665 WP_200772274.1 701917..702585(+) (comEA/celA/cilE) [Streptococcus lactarius strain CCUG 66490]
MEDLIEKIKEYKLFLGIAVIGLLVGGYFILQQPKSSTSTVPDLYQASSVSSSQKKTQVSSSKEEKTSPSMSEEAEVITVD
VKGAVKQPGVYELRSNSRVHDAIYKAGGMTPEANSQSVNLAQKLTDEAVIYVAKEGEDVPAAGGSASPTTSSASSKRPGK
VHLNRATEAELQTVSGIGQKRASDIIAYREANGPFRSVEDLKNVSGIGEKTLEKLKDAFTVD

Nucleotide


Download         Length: 669 bp        

>NTDB_id=552044 J4854_RS03665 WP_200772274.1 701917..702585(+) (comEA/celA/cilE) [Streptococcus lactarius strain CCUG 66490]
ATGGAAGATTTGATTGAAAAAATTAAAGAATACAAACTCTTTTTAGGGATTGCAGTGATTGGCCTTTTAGTGGGTGGCTA
TTTTATCCTTCAACAACCTAAGTCAAGTACTTCGACAGTTCCAGATCTTTATCAAGCGTCTAGTGTATCATCATCCCAGA
AAAAAACACAGGTCTCTAGTTCAAAAGAAGAAAAGACATCCCCTTCAATGTCAGAAGAAGCTGAGGTCATTACGGTGGAT
GTCAAGGGGGCTGTTAAACAGCCAGGAGTTTATGAATTACGGTCCAATAGTCGGGTTCACGATGCGATTTATAAAGCTGG
TGGGATGACCCCAGAAGCTAATAGTCAATCGGTTAATTTGGCGCAAAAACTCACGGATGAAGCTGTCATATATGTGGCTA
AAGAAGGAGAAGATGTTCCCGCGGCTGGCGGTTCAGCGAGCCCAACTACCTCATCTGCAAGCTCAAAAAGACCGGGAAAG
GTGCATTTGAACCGTGCAACTGAGGCTGAATTACAGACTGTTTCAGGCATTGGCCAAAAGAGGGCCTCTGATATCATCGC
CTACCGTGAAGCAAACGGTCCTTTTCGATCGGTAGAGGATCTAAAAAATGTCTCAGGAATAGGTGAGAAAACGCTGGAGA
AATTAAAAGATGCTTTCACGGTGGATTAA

Domains

Predicted by InterproScan.

SLBB domain (SLBB)

(79-132)

Helix-hairpin-helix motif (HHH_3)

(160-219)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/celA/cilE Streptococcus mitis NCTC 12261

51.802

100

0.518
  comEA/celA/cilE Streptococcus pneumoniae D39

50.901

100

0.509
  comEA/celA/cilE Streptococcus pneumoniae Rx1

50.901

100

0.509
  comEA/celA/cilE Streptococcus pneumoniae R6

50.901

100

0.509
  comEA/celA/cilE Streptococcus pneumoniae TIGR4

50.45

100

0.505
  comEA/celA/cilE Streptococcus mitis SK321

48.879

100

0.491
  comEA Lactococcus lactis subsp. cremoris KW2

43.231

100

0.446
  comEA Streptococcus thermophilus LMD-9

43.231

100

0.446