Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   J4N42_RS11935 Genome accession   NZ_CP071859
Coordinates   2693895..2695121 (+) Length   408 a.a.
NCBI ID   WP_252028230.1    Uniprot ID   -
Organism   Vibrio sp. SCSIO 43135     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2688895..2700121
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J4N42_RS11910 (J4N42_11900) fldB 2689257..2689775 (+) 519 WP_252028222.1 flavodoxin FldB -
  J4N42_RS11915 (J4N42_11905) ampD 2689880..2690434 (-) 555 WP_252028224.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  J4N42_RS11920 (J4N42_11910) nadC 2690590..2691492 (+) 903 WP_252028226.1 carboxylating nicotinate-nucleotide diphosphorylase -
  J4N42_RS11925 (J4N42_11915) - 2691747..2692175 (+) 429 WP_252028227.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  J4N42_RS11930 (J4N42_11920) pilB 2692186..2693871 (+) 1686 WP_252028229.1 type IV-A pilus assembly ATPase PilB Machinery gene
  J4N42_RS11935 (J4N42_11925) pilC 2693895..2695121 (+) 1227 WP_252028230.1 type II secretion system F family protein Machinery gene
  J4N42_RS11940 (J4N42_11930) pilD 2695167..2696036 (+) 870 WP_252028231.1 A24 family peptidase Machinery gene
  J4N42_RS11945 (J4N42_11935) coaE 2696038..2696652 (+) 615 WP_252028232.1 dephospho-CoA kinase -
  J4N42_RS11950 (J4N42_11940) zapD 2696679..2697419 (+) 741 WP_252028233.1 cell division protein ZapD -
  J4N42_RS11955 (J4N42_11945) yacG 2697499..2697696 (+) 198 WP_252028234.1 DNA gyrase inhibitor YacG -
  J4N42_RS11960 (J4N42_11950) eno 2698204..2699502 (-) 1299 WP_252028235.1 phosphopyruvate hydratase -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 44721.01 Da        Isoelectric Point: 10.4670

>NTDB_id=548514 J4N42_RS11935 WP_252028230.1 2693895..2695121(+) (pilC) [Vibrio sp. SCSIO 43135]
MKRSTTSTLKNYRWKGINSSGKKVAGQTLALTELEVRDKLKEQHIQIKKVKKGSVSLFTRLAHRVKAKDITLLTRQLATM
LATGVPIVQALKLVSDNHRKAEMKSILSQVTKAVEAGTPISKAMRTASPHFDSLYVDLVATGEQAGNIAQVFERLATYRE
KSEQLKAKVIKALIYPAMVVLVALGVSYLMLTMVIPEFEMMFKGFGADLPWFTQQVLKLSHLAQAYSVFIAAGIATIVLA
IKIIRSRSLQFRLSTCRAGLRFPIIGGVLTKAAIAKFSRTLATSFSAGIPILSSLKTTAKTAGNIHYQVAIDDVYRDTAA
GMPMYIAMRNTQAFPEMVLQMVMIGEESGKLDDMLNKVASIYEFEVDNTVDNLGKILEPLIIVFLGGVVGGLVVAMYLPI
FNLMSVLG

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=548514 J4N42_RS11935 WP_252028230.1 2693895..2695121(+) (pilC) [Vibrio sp. SCSIO 43135]
ATGAAACGATCGACAACCTCTACGCTCAAAAATTACCGCTGGAAAGGCATCAATAGTTCAGGAAAAAAAGTCGCAGGACA
AACCCTTGCACTCACTGAACTTGAGGTTCGAGATAAACTGAAAGAACAGCATATTCAGATCAAGAAAGTAAAAAAAGGCA
GTGTCTCTCTTTTCACACGTTTGGCACATCGAGTTAAAGCGAAAGATATCACTTTACTCACTCGTCAGTTAGCGACCATG
CTCGCCACGGGGGTTCCAATCGTCCAAGCACTTAAACTCGTCTCTGATAACCACCGCAAAGCAGAAATGAAATCGATCTT
GTCGCAAGTCACCAAAGCCGTCGAAGCGGGAACACCTATCTCCAAAGCAATGCGCACCGCAAGCCCACACTTTGATTCAC
TCTACGTCGATTTAGTCGCAACAGGAGAGCAAGCGGGTAATATTGCACAGGTCTTTGAAAGGCTTGCTACCTACAGAGAA
AAAAGCGAACAGCTGAAAGCCAAGGTGATCAAAGCCCTCATTTACCCCGCGATGGTTGTATTAGTCGCTCTAGGTGTATC
TTATCTAATGCTCACAATGGTTATCCCTGAATTTGAGATGATGTTTAAAGGCTTTGGTGCAGATCTTCCGTGGTTTACGC
AGCAAGTGCTAAAGCTGTCTCATTTAGCGCAAGCGTACAGTGTGTTCATCGCTGCAGGCATCGCTACTATCGTATTGGCT
ATCAAGATTATCCGCAGTCGCTCACTTCAATTTCGCCTTTCGACTTGCAGAGCGGGGTTACGTTTTCCCATCATAGGCGG
GGTGCTAACCAAAGCCGCTATTGCTAAGTTCAGCCGTACACTCGCGACGAGCTTTAGCGCGGGAATTCCTATACTCTCAA
GCTTAAAAACTACCGCAAAAACCGCAGGGAACATTCACTACCAAGTCGCAATCGATGATGTTTACCGAGATACCGCAGCA
GGCATGCCGATGTATATTGCAATGCGTAACACCCAAGCATTTCCGGAGATGGTGCTACAAATGGTAATGATTGGTGAGGA
GTCGGGGAAACTGGATGACATGCTCAACAAAGTTGCCAGTATTTATGAATTCGAAGTCGATAACACCGTTGATAACCTTG
GAAAGATTCTTGAGCCTCTGATCATTGTCTTTCTAGGTGGGGTTGTAGGTGGATTAGTGGTCGCAATGTATCTACCAATC
TTTAACTTAATGAGTGTATTAGGATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(74-196)

Type II secretion system (T2SS), protein F (T2SSF)

(277-399)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Vibrio cholerae strain A1552

81.373

100

0.814
  pilC Vibrio campbellii strain DS40M4

76.5

98.039

0.75
  pilC Legionella pneumophila strain ERS1305867

42.145

98.284

0.414
  pilC Pseudomonas stutzeri DSM 10701

41.147

98.284

0.404
  pilC Acinetobacter baylyi ADP1

40.441

100

0.404
  pilG Neisseria meningitidis 44/76-A

40.347

99.02

0.4
  pilG Neisseria gonorrhoeae MS11

40.099

99.02

0.397
  pilC Acinetobacter baumannii D1279779

40.25

98.039

0.395