Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   LSP20_RS01330 Genome accession   NZ_CP089065
Coordinates   276188..276553 (-) Length   121 a.a.
NCBI ID   WP_003084587.1    Uniprot ID   A0A0H2ZKW2
Organism   Pseudomonas aeruginosa strain UNC_PaerCF34     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 271188..281553
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LSP20_RS01315 (LSP20_01315) pilK 272532..273407 (-) 876 WP_003084594.1 type 4 fimbrial methyltransferase PilK -
  LSP20_RS01320 (LSP20_01320) pilJ 273468..275516 (-) 2049 WP_003084592.1 chemotaxis chemoreceptor PilJ -
  LSP20_RS01325 (LSP20_01325) - 275601..276137 (-) 537 WP_003084590.1 chemotaxis protein CheW -
  LSP20_RS01330 (LSP20_01330) pilH 276188..276553 (-) 366 WP_003084587.1 twitching motility response regulator PilH Machinery gene
  LSP20_RS01335 (LSP20_01335) pilG 276600..277007 (-) 408 WP_003084583.1 twitching motility response regulator PilG Regulator
  LSP20_RS01340 (LSP20_01340) gshB 277262..278215 (+) 954 WP_023518290.1 glutathione synthase -
  LSP20_RS01345 (LSP20_01345) - 278362..279255 (+) 894 WP_023518289.1 energy transducer TonB -
  LSP20_RS01350 (LSP20_01350) - 279304..279873 (+) 570 WP_003100947.1 YqgE/AlgH family protein -
  LSP20_RS01355 (LSP20_01355) ruvX 279873..280307 (+) 435 WP_003084575.1 Holliday junction resolvase RuvX -
  LSP20_RS01360 (LSP20_01360) pyrR 280419..280931 (+) 513 WP_003084574.1 bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR -

Sequence

Protein


Download         Length: 121 a.a.        Molecular weight: 13273.30 Da        Isoelectric Point: 5.1961

>NTDB_id=548513 LSP20_RS01330 WP_003084587.1 276188..276553(-) (pilH) [Pseudomonas aeruginosa strain UNC_PaerCF34]
MARILIVDDSPTEMYKLTAMLEKHGHQVLKAENGGDGVALARQEKPDVVLMDIVMPGLNGFQATRQLTKDAETSAIPVII
VTTKDQETDKVWGKRQGARDYLTKPVDEETLLKTINAVLAG

Nucleotide


Download         Length: 366 bp        

>NTDB_id=548513 LSP20_RS01330 WP_003084587.1 276188..276553(-) (pilH) [Pseudomonas aeruginosa strain UNC_PaerCF34]
ATGGCTCGTATTTTGATTGTTGATGACTCTCCGACCGAGATGTACAAGCTGACCGCCATGCTGGAAAAGCATGGTCACCA
GGTACTCAAGGCCGAGAACGGCGGCGACGGCGTCGCCCTGGCCCGCCAGGAAAAGCCCGACGTGGTCCTGATGGACATCG
TCATGCCCGGCCTCAACGGCTTCCAGGCGACCCGTCAATTGACCAAGGACGCCGAGACCAGCGCCATCCCGGTGATCATC
GTCACCACCAAGGACCAGGAGACCGACAAGGTCTGGGGCAAGCGCCAGGGCGCTCGCGACTACCTGACCAAGCCGGTGGA
CGAAGAGACCCTGCTGAAAACCATCAATGCGGTGCTGGCGGGCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZKW2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

36.975

98.347

0.364