Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   J4N42_RS00185 Genome accession   NZ_CP071859
Coordinates   40183..41328 (+) Length   381 a.a.
NCBI ID   WP_252028934.1    Uniprot ID   -
Organism   Vibrio sp. SCSIO 43135     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 35183..46328
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J4N42_RS00165 (J4N42_00165) rsmB 36085..37365 (-) 1281 WP_252028930.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  J4N42_RS00170 (J4N42_00170) fmt 37430..38377 (-) 948 WP_252028931.1 methionyl-tRNA formyltransferase -
  J4N42_RS00175 (J4N42_00175) def 38427..38948 (-) 522 WP_252028932.1 peptide deformylase -
  J4N42_RS00180 (J4N42_00180) - 39077..40183 (+) 1107 WP_252028933.1 LysM peptidoglycan-binding domain-containing protein -
  J4N42_RS00185 (J4N42_00185) dprA 40183..41328 (+) 1146 WP_252028934.1 DNA-processing protein DprA Machinery gene
  J4N42_RS00190 (J4N42_00190) - 41331..41807 (+) 477 WP_279348551.1 DUF494 family protein -
  J4N42_RS00195 (J4N42_00195) - 41823..42404 (+) 582 WP_252028935.1 topoisomerase DNA-binding C4 zinc finger domain-containing protein -
  J4N42_RS00200 (J4N42_00200) - 42473..43603 (-) 1131 WP_252028936.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  J4N42_RS00205 (J4N42_00205) purE 43608..44093 (-) 486 WP_252028937.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  J4N42_RS00210 (J4N42_00210) - 44294..44851 (+) 558 WP_252028938.1 L-threonylcarbamoyladenylate synthase -
  J4N42_RS00215 (J4N42_00215) hemF 44885..45802 (+) 918 WP_252028939.1 oxygen-dependent coproporphyrinogen oxidase -

Sequence

Protein


Download         Length: 381 a.a.        Molecular weight: 41207.01 Da        Isoelectric Point: 6.8316

>NTDB_id=548483 J4N42_RS00185 WP_252028934.1 40183..41328(+) (dprA) [Vibrio sp. SCSIO 43135]
MCSQSLFAWLALSFTPKLGAKALSRLMSIDSAPSLIKRDSPSLQAIGLTTEQIRYLHGEAQRQAELSLTWAEQDSHTILT
PFDSIYPPLLKEIASAPPVLFVKGEASCLSEPQLAMIGSRNASLQGLQIAKEYASAFTKRGLVVTSGLALGVDGHAHDGA
LRAGGKTIAVLGSGLEQIYPARHRKLASRVVENGALVSEFRPDTKPRPEHFPRRNRIISGLSVGVLVVEAAEKSGSLITA
RYAAEQGRDVFAIPGSIHSPTSRGGNLLIKNGACLVQSEQDVLDEIDTLVNWSIDNRVSSQPDLFNDKFEQPRENGKEFN
HNEELPFPQLLANVGIEATPVDILASRTNIPVHEVMMQLLELELSGHVVAVSGGYIRKGRG

Nucleotide


Download         Length: 1146 bp        

>NTDB_id=548483 J4N42_RS00185 WP_252028934.1 40183..41328(+) (dprA) [Vibrio sp. SCSIO 43135]
ATGTGCTCTCAATCGTTATTTGCTTGGTTAGCATTGAGCTTTACGCCTAAGCTGGGGGCTAAGGCTCTTTCTCGCTTAAT
GTCGATCGACTCTGCACCGAGTTTGATTAAGCGAGATTCACCTTCACTGCAAGCGATTGGACTGACTACTGAACAGATTC
GATACCTTCATGGAGAAGCACAGCGCCAAGCGGAGCTAAGCCTAACTTGGGCAGAGCAAGACAGTCACACTATTCTCACC
CCATTTGATTCTATCTACCCTCCTCTTTTGAAAGAAATCGCCTCAGCGCCTCCTGTGTTATTTGTTAAAGGAGAGGCCAG
TTGCTTGTCTGAACCGCAACTGGCGATGATTGGTAGCCGCAATGCCAGTTTGCAAGGGCTTCAGATTGCGAAAGAATATG
CGAGCGCCTTTACTAAGCGTGGCCTAGTGGTAACGAGTGGCTTAGCGTTAGGTGTAGATGGTCATGCACATGATGGAGCG
TTGCGAGCCGGGGGAAAGACGATTGCGGTATTAGGCTCTGGTCTAGAGCAAATTTACCCAGCAAGACATAGGAAGCTGGC
TAGTCGAGTGGTTGAAAATGGTGCCTTGGTCTCTGAGTTTCGCCCAGATACTAAGCCTAGGCCGGAGCACTTTCCTCGCC
GGAATCGCATTATCAGTGGTTTGTCTGTTGGTGTCTTAGTGGTCGAAGCGGCAGAAAAAAGCGGCTCACTCATCACTGCG
CGTTATGCTGCCGAGCAAGGGCGAGATGTTTTTGCAATTCCAGGCTCAATTCATTCCCCGACTAGCCGAGGGGGCAACCT
TTTGATTAAAAACGGGGCGTGTTTAGTACAAAGTGAGCAGGACGTTTTAGATGAAATTGATACTTTGGTAAACTGGTCTA
TTGATAATAGGGTGAGCAGTCAGCCAGATCTTTTCAATGATAAATTTGAGCAGCCACGAGAAAATGGTAAAGAATTCAAT
CACAATGAAGAATTGCCATTTCCGCAACTGTTAGCTAACGTAGGAATAGAGGCTACACCAGTTGATATTCTCGCAAGCAG
GACCAATATACCTGTGCATGAAGTCATGATGCAGCTCTTAGAGCTTGAGCTTTCAGGGCATGTTGTTGCAGTTTCCGGTG
GCTATATTCGTAAGGGGAGGGGCTAG

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(72-277)

DprA winged helix domain (DprA_WH)

(329-374)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

64.191

98.95

0.635
  dprA Vibrio cholerae strain A1552

57.592

100

0.577
  dprA Glaesserella parasuis strain SC1401

47.185

97.9

0.462
  dprA Neisseria meningitidis MC58

37.931

100

0.404
  dprA Neisseria meningitidis strain C311

37.931

100

0.404
  dprA Neisseria gonorrhoeae MS11

37.255

100

0.399
  dprA Neisseria gonorrhoeae strain FA1090

37.01

100

0.396
  dprA Legionella pneumophila strain ERS1305867

48.232

81.627

0.394
  dprA Haemophilus influenzae Rd KW20

43.023

90.289

0.388