Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   J4N44_RS16690 Genome accession   NZ_CP071852
Coordinates   3507202..3508311 (-) Length   369 a.a.
NCBI ID   WP_252044686.1    Uniprot ID   -
Organism   Vibrio sp. SCSIO 43155     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 3502202..3513311
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J4N44_RS16660 (J4N44_16595) hemF 3502731..3503648 (-) 918 WP_017817571.1 oxygen-dependent coproporphyrinogen oxidase -
  J4N44_RS16665 (J4N44_16600) - 3503683..3504240 (-) 558 WP_017190968.1 L-threonylcarbamoyladenylate synthase -
  J4N44_RS16670 (J4N44_16605) purE 3504440..3504925 (+) 486 WP_061065488.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  J4N44_RS16675 (J4N44_16610) - 3504930..3506063 (+) 1134 WP_252044685.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  J4N44_RS16680 (J4N44_16615) - 3506127..3506696 (-) 570 WP_005450974.1 topoisomerase DNA-binding C4 zinc finger domain-containing protein -
  J4N44_RS16685 (J4N44_16620) - 3506720..3507199 (-) 480 WP_005429833.1 DUF494 family protein -
  J4N44_RS16690 (J4N44_16625) dprA 3507202..3508311 (-) 1110 WP_252044686.1 DNA-processing protein DprA Machinery gene
  J4N44_RS16695 (J4N44_16630) - 3508295..3509389 (-) 1095 WP_009701852.1 LysM peptidoglycan-binding domain-containing protein -
  J4N44_RS16700 (J4N44_16635) def 3509528..3510046 (+) 519 WP_005450979.1 peptide deformylase -
  J4N44_RS16705 (J4N44_16640) fmt 3510080..3511027 (+) 948 WP_252044687.1 methionyl-tRNA formyltransferase -
  J4N44_RS16710 (J4N44_16645) rsmB 3511109..3512392 (+) 1284 WP_239212941.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -

Sequence

Protein


Download         Length: 369 a.a.        Molecular weight: 39753.46 Da        Isoelectric Point: 6.0412

>NTDB_id=548389 J4N44_RS16690 WP_252044686.1 3507202..3508311(-) (dprA) [Vibrio sp. SCSIO 43155]
MKLRNDTDLAAWLKLSCLPGIGGVKMNKLLSKDTPSNIVGYSTEQLQLLGFTTKQLQAWSEVDKEVDACLTWVSASSHHH
IVTLADTLYPPLLKQTVAPPPLLFIKGEASCLSQPQIAMVGSRNASVDGLQHARQFAADLVKHDLIVTSGLALGIDGHAH
DGALQADGKTIAVLGSGLEQVYPARHRGLARRVMENGALVSEFRPDAKPRAENFPRRNRIISGLSLGVLVVEAAEKSGSL
ITARYALEQDREVFAIPASINAPNASGGNQLIRNGACLVQNTQEVLNEIQSLLDWSINQSLDLFSTAIDEEELPFPQLLA
NVGNEATPVDILASRTNIPVQEVMMQLLELELSGHVVAVSGGYIRKGRG

Nucleotide


Download         Length: 1110 bp        

>NTDB_id=548389 J4N44_RS16690 WP_252044686.1 3507202..3508311(-) (dprA) [Vibrio sp. SCSIO 43155]
ATGAAACTACGCAATGATACTGACCTCGCCGCCTGGTTAAAGCTGAGCTGCTTGCCAGGCATTGGCGGGGTGAAGATGAA
TAAGCTGCTGAGTAAAGATACGCCAAGCAATATTGTCGGATACTCAACTGAGCAGCTTCAGCTTTTGGGTTTTACCACGA
AGCAACTGCAAGCATGGTCTGAGGTCGATAAAGAAGTCGACGCTTGTCTTACTTGGGTTAGCGCCTCATCTCATCATCAT
ATTGTTACTTTGGCGGATACTCTGTATCCCCCACTTCTCAAACAAACGGTCGCTCCACCTCCTTTACTATTTATAAAGGG
AGAAGCGAGTTGTTTGTCTCAACCTCAAATTGCCATGGTCGGCAGCCGTAATGCTAGTGTTGATGGGCTTCAACACGCAC
GTCAGTTCGCTGCAGATTTGGTGAAACATGATCTGATTGTTACCAGTGGTTTGGCTTTGGGTATCGATGGACACGCTCAT
GATGGTGCTTTGCAAGCGGACGGTAAAACCATTGCGGTATTGGGTTCAGGGTTAGAGCAAGTTTATCCAGCCCGTCACCG
AGGTTTAGCGCGGCGAGTGATGGAAAACGGTGCGTTAGTCTCTGAGTTTCGCCCAGATGCAAAACCTCGAGCAGAAAACT
TCCCACGACGTAATCGAATCATTAGTGGTTTGTCGCTTGGCGTGTTGGTTGTCGAAGCAGCAGAAAAGAGTGGCTCATTA
ATCACCGCTCGCTACGCTCTTGAGCAAGACCGTGAAGTTTTCGCTATACCAGCTTCGATTAATGCTCCCAATGCCAGTGG
TGGTAATCAGTTGATTCGTAATGGGGCTTGTCTCGTACAAAATACTCAGGAGGTGTTGAATGAAATACAGTCTTTGCTCG
ACTGGTCTATTAATCAGAGCTTGGATTTATTTTCTACGGCAATTGATGAAGAAGAATTGCCATTTCCTCAGCTGTTAGCT
AACGTAGGAAATGAGGCTACACCAGTTGATATTCTTGCAAGCAGGACCAATATACCTGTCCAAGAAGTCATGATGCAGCT
CTTAGAGCTTGAGCTTTCAGGGCATGTTGTTGCAGTATCCGGTGGCTATATTCGAAAGGGGAGGGGCTAG

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(78-280)

DprA winged helix domain (DprA_WH)

(316-362)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

92.954

100

0.93
  dprA Vibrio cholerae strain A1552

58.649

100

0.588
  dprA Glaesserella parasuis strain SC1401

46.381

100

0.469
  dprA Haemophilus influenzae Rd KW20

44.706

92.141

0.412
  dprA Legionella pneumophila strain ERS1305867

49.662

80.217

0.398
  dprA Neisseria meningitidis strain C311

37.275

100

0.393
  dprA Neisseria meningitidis MC58

37.275

100

0.393
  dprA Neisseria gonorrhoeae strain FA1090

35.659

100

0.374
  dprA Neisseria gonorrhoeae MS11

35.659

100

0.374