Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   J4N45_RS18430 Genome accession   NZ_CP071850
Coordinates   3869196..3870296 (-) Length   366 a.a.
NCBI ID   WP_252012958.1    Uniprot ID   -
Organism   Vibrio sp. SCSIO 43140     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 3864196..3875296
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J4N45_RS18400 (J4N45_18415) hemF 3864768..3865673 (-) 906 WP_252012955.1 oxygen-dependent coproporphyrinogen oxidase -
  J4N45_RS18405 (J4N45_18420) - 3865683..3866240 (-) 558 WP_252012956.1 L-threonylcarbamoyladenylate synthase -
  J4N45_RS18410 (J4N45_18425) purE 3866424..3866909 (+) 486 WP_042478050.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  J4N45_RS18415 (J4N45_18430) - 3866912..3868042 (+) 1131 WP_252012957.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  J4N45_RS18420 (J4N45_18435) - 3868093..3868671 (-) 579 WP_234494868.1 topoisomerase DNA-binding C4 zinc finger domain-containing protein -
  J4N45_RS18425 (J4N45_18440) - 3868717..3869193 (-) 477 WP_042478052.1 DUF494 family protein -
  J4N45_RS18430 (J4N45_18445) dprA 3869196..3870296 (-) 1101 WP_252012958.1 DNA-processing protein DprA Machinery gene
  J4N45_RS18435 (J4N45_18450) - 3870334..3871413 (-) 1080 WP_252012959.1 LysM peptidoglycan-binding domain-containing protein -
  J4N45_RS18440 (J4N45_18455) def 3871529..3872038 (+) 510 WP_042478058.1 peptide deformylase -
  J4N45_RS18445 (J4N45_18460) fmt 3872071..3873018 (+) 948 WP_252012960.1 methionyl-tRNA formyltransferase -
  J4N45_RS18450 (J4N45_18465) rsmB 3873109..3874389 (+) 1281 WP_252012961.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -

Sequence

Protein


Download         Length: 366 a.a.        Molecular weight: 39680.36 Da        Isoelectric Point: 6.7725

>NTDB_id=548345 J4N45_RS18430 WP_252012958.1 3869196..3870296(-) (dprA) [Vibrio sp. SCSIO 43140]
MDDNTRVAWLRLSLCPGIGPVTFYKLLAVDDPRNIVESDEQTLSAIGLKPNQVSFIRRKSVELAHKAMEWSNGADNHILI
HQDEHYPPLLRESKGCPPVLYVQGDVSLLSDQQIAMVGSRNASTGGLETARSFAAEFVRYGYCVTSGLALGIDGHAHQGA
LDACGKTIAVLGSGLGSIYPARHRSLAQRVAQHGALVSEHLPWIKPRAEHFPRRNRIVSGLSLGVVVVEAAEKSGSLITA
KYAAEQGREVFAIPGSIRHAYHSGCHSLIRTGACLVQSVEDVLCEIESLSNWSKKVQPTLFDQVIDKEELPFADLLANVG
IEATPVDILAQKTHIPVQEVMQQLLELELSGHVVAVNGGYILKGRG

Nucleotide


Download         Length: 1101 bp        

>NTDB_id=548345 J4N45_RS18430 WP_252012958.1 3869196..3870296(-) (dprA) [Vibrio sp. SCSIO 43140]
ATGGATGATAATACGAGAGTAGCTTGGCTCCGCCTCTCCCTGTGTCCGGGAATTGGTCCCGTCACGTTTTATAAGCTGCT
AGCCGTTGATGACCCACGCAACATTGTGGAGTCAGATGAACAAACCTTATCTGCGATAGGGCTCAAGCCAAATCAAGTGA
GCTTTATTCGGCGTAAGTCAGTTGAGCTTGCACATAAAGCGATGGAATGGAGCAATGGTGCCGACAACCACATCTTAATC
CATCAAGATGAGCACTATCCGCCATTATTGCGTGAGTCTAAGGGCTGTCCTCCGGTTCTTTATGTCCAAGGCGATGTGAG
TTTGTTGTCCGATCAGCAAATCGCCATGGTAGGCAGCCGAAATGCCAGCACAGGTGGTCTCGAGACTGCGCGCAGCTTTG
CGGCTGAGTTTGTTCGATATGGCTATTGCGTAACAAGCGGCCTGGCACTCGGAATTGATGGCCATGCTCATCAGGGAGCA
CTAGATGCATGCGGGAAAACCATAGCGGTATTGGGCTCAGGGCTAGGCTCTATTTATCCAGCCCGCCACCGTTCCCTCGC
GCAAAGGGTTGCTCAGCACGGAGCCTTGGTGAGTGAGCACCTTCCGTGGATAAAGCCAAGAGCGGAGCACTTTCCGAGAC
GAAATAGAATTGTCAGCGGGCTATCACTCGGTGTCGTGGTGGTGGAAGCGGCCGAGAAAAGTGGCTCACTGATAACCGCA
AAATATGCAGCGGAGCAAGGACGTGAAGTTTTTGCTATTCCCGGTTCCATTCGCCATGCCTATCACTCGGGGTGTCATTC
ATTAATACGAACGGGCGCCTGTCTCGTACAAAGTGTTGAAGATGTATTGTGTGAAATAGAATCTCTGTCTAACTGGTCTA
AAAAAGTACAACCAACACTTTTTGACCAAGTTATTGATAAAGAAGAATTGCCATTTGCAGATCTGTTGGCTAACGTAGGA
ATAGAGGCAACGCCGGTTGATATTTTGGCGCAAAAGACCCATATTCCTGTTCAAGAGGTCATGCAACAGCTTTTAGAGCT
CGAATTATCGGGTCATGTTGTTGCTGTAAACGGTGGTTATATTCTTAAGGGGAGAGGCTAG

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(75-277)

DprA winged helix domain (DprA_WH)

(313-359)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

61.202

100

0.612
  dprA Vibrio cholerae strain A1552

54.987

100

0.557
  dprA Glaesserella parasuis strain SC1401

44.444

100

0.448
  dprA Legionella pneumophila strain ERS1305867

42.938

96.721

0.415
  dprA Haemophilus influenzae Rd KW20

42.197

94.536

0.399
  dprA Neisseria meningitidis strain C311

35.661

100

0.391
  dprA Neisseria meningitidis MC58

35.661

100

0.391
  dprA Neisseria gonorrhoeae MS11

36.34

100

0.385
  dprA Neisseria gonorrhoeae strain FA1090

36.082

100

0.383