Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   J4N45_RS17160 Genome accession   NZ_CP071850
Coordinates   3598287..3599936 (-) Length   549 a.a.
NCBI ID   WP_252014712.1    Uniprot ID   -
Organism   Vibrio sp. SCSIO 43140     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3593287..3604936
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J4N45_RS17140 (J4N45_17150) - 3593885..3594709 (-) 825 WP_234495071.1 Dam family site-specific DNA-(adenine-N6)-methyltransferase -
  J4N45_RS17145 (J4N45_17155) - 3594868..3596367 (-) 1500 WP_252012668.1 AAA family ATPase -
  J4N45_RS17150 (J4N45_17160) aroB 3596468..3597553 (-) 1086 WP_042477191.1 3-dehydroquinate synthase -
  J4N45_RS17155 (J4N45_17165) aroK 3597583..3598101 (-) 519 WP_042477283.1 shikimate kinase AroK -
  J4N45_RS17160 (J4N45_17170) pilQ 3598287..3599936 (-) 1650 WP_252014712.1 type IV pilus secretin PilQ family protein Machinery gene
  J4N45_RS17165 (J4N45_17175) - 3600026..3600535 (-) 510 WP_252012669.1 pilus assembly protein PilP -
  J4N45_RS17170 (J4N45_17180) pilO 3600532..3601110 (-) 579 WP_252012670.1 type 4a pilus biogenesis protein PilO -
  J4N45_RS27280 - 3601110..3601319 (-) 210 WP_353505873.1 hypothetical protein -
  J4N45_RS17175 (J4N45_17185) - 3601342..3601503 (-) 162 WP_252012671.1 hypothetical protein -
  J4N45_RS17180 (J4N45_17190) pilM 3601505..3602482 (-) 978 WP_252012672.1 pilus assembly protein PilM -

Sequence

Protein


Download         Length: 549 a.a.        Molecular weight: 59432.56 Da        Isoelectric Point: 4.3492

>NTDB_id=548341 J4N45_RS17160 WP_252014712.1 3598287..3599936(-) (pilQ) [Vibrio sp. SCSIO 43140]
MANANNLKRVSFEVDDKRQGVIVIELSDNAIAVDVAGAEYGLDIMLQQTSVGAEQMSIYDVTDFATLVNTIEVFDEAPHA
RLQVSSTQAVDYQTMVRGNQLRVTVIPLTQEKADEKALETINKGQLTSINFQDMPVRNVLQLLADYNDFNLVVSDTVQGN
LTLRLDSVPWTDVLDIILRVKGLDKRVKGDVVLVAPKAELDRQEKQALEKNRLTEQIGQLESQIVKIHYANASDVAAMIG
GEGAVSMLSERGSVAIDERTNSLLLRELPSNINVIKSIIAELDVPVKQVQIEARVVTIKEGNIEELGIRWGVSSTNGNTT
IGGSIESNLAAAGIGDGSLEIDDILNVNLPAISDNASSIAFQVASLGSNTLLDLELSALQNESKAEIISSPRLITTNKKS
AYIEQGTEIPYLKSTSSGATAVEFKKAVLSLTVTPQITPDNRLILDLDVTQDRVGEVLKTLEGETVAIDTQRIGTQVLVN
NGETVVLGGIYQHSFSNKIDKVPLLGDIPGLGALFRRTYENIGKNELLIFVTPQIITPTPIVAELGNSL

Nucleotide


Download         Length: 1650 bp        

>NTDB_id=548341 J4N45_RS17160 WP_252014712.1 3598287..3599936(-) (pilQ) [Vibrio sp. SCSIO 43140]
ATGGCAAATGCCAACAATCTAAAGCGCGTATCCTTTGAGGTGGATGACAAGCGTCAGGGCGTCATTGTTATTGAGTTATC
TGATAACGCTATTGCGGTGGATGTCGCCGGGGCTGAGTATGGTCTCGATATCATGCTCCAACAAACCTCGGTGGGCGCTG
AGCAGATGTCGATTTATGATGTAACCGATTTTGCCACATTGGTGAACACGATAGAGGTATTCGATGAAGCGCCACACGCT
CGCCTTCAAGTTTCCTCAACCCAAGCTGTCGACTATCAAACGATGGTAAGAGGGAATCAACTTCGAGTGACCGTTATTCC
ACTCACTCAAGAAAAAGCCGATGAGAAAGCGCTCGAAACCATCAACAAAGGGCAACTAACCTCGATTAATTTTCAAGATA
TGCCTGTGCGCAACGTGCTTCAGCTTCTTGCCGATTACAACGATTTCAATCTAGTCGTATCCGATACGGTGCAAGGCAAT
CTCACATTGCGATTAGATAGCGTGCCGTGGACAGACGTTCTGGACATTATCTTACGAGTGAAGGGGCTTGATAAGCGAGT
GAAAGGGGACGTAGTGTTGGTCGCTCCCAAGGCTGAGTTAGACAGGCAGGAGAAGCAAGCGCTTGAAAAGAACCGACTGA
CTGAGCAAATAGGGCAGCTCGAGTCGCAGATCGTCAAGATTCACTACGCGAATGCGTCGGATGTCGCCGCCATGATTGGT
GGCGAAGGGGCGGTGAGTATGCTCTCTGAAAGAGGCTCTGTCGCGATTGATGAGCGGACCAACTCCCTCCTGTTACGTGA
GTTGCCGAGCAACATTAACGTGATTAAATCGATCATTGCAGAGCTCGATGTACCGGTTAAGCAGGTACAGATAGAAGCGC
GTGTTGTGACGATCAAAGAAGGTAATATTGAAGAGCTTGGTATTCGTTGGGGTGTCAGTTCGACCAATGGCAATACGACA
ATTGGTGGCTCGATTGAGAGTAACCTGGCCGCCGCAGGCATTGGTGACGGGAGCCTTGAAATCGATGATATTCTGAACGT
AAACTTGCCAGCCATTTCCGACAATGCATCGAGTATCGCCTTTCAAGTGGCGAGTCTAGGTTCAAACACCTTACTCGACT
TAGAACTCTCGGCGCTACAAAACGAGTCAAAAGCAGAGATCATTTCAAGCCCAAGGCTTATCACCACGAACAAGAAATCC
GCCTACATTGAGCAAGGGACTGAGATCCCATACCTCAAATCCACTTCAAGTGGCGCAACTGCGGTAGAGTTTAAAAAGGC
GGTGCTCTCGCTTACCGTCACCCCACAAATTACGCCGGACAATCGACTCATTTTAGATTTGGACGTTACCCAAGACCGTG
TTGGTGAAGTGCTGAAAACCCTCGAAGGAGAAACGGTCGCAATCGATACTCAACGAATTGGCACCCAAGTATTAGTCAAC
AATGGCGAAACGGTGGTTTTGGGAGGAATTTATCAACATTCCTTTTCAAATAAGATAGATAAAGTGCCGCTTCTCGGTGA
TATTCCGGGTTTAGGTGCATTATTTAGACGAACCTACGAAAATATCGGCAAGAATGAGTTATTAATCTTTGTCACGCCAC
AGATCATTACCCCTACACCCATCGTGGCTGAGCTTGGTAACTCATTGTAA

Domains

Predicted by InterproScan.

Bacterial type II and III secretion system protein (Secretin)

(378-536)

Bacterial type II/III secretion system short domain (Secretin_N)

(223-288)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Vibrio cholerae strain A1552

65.619

98.543

0.647
  pilQ Vibrio cholerae O1 biovar El Tor strain E7946

65.619

98.543

0.647
  pilQ Vibrio campbellii strain DS40M4

64.825

98.907

0.641
  pilQ Legionella pneumophila strain Lp02

41.744

98.179

0.41
  pilQ Legionella pneumophila strain ERS1305867

41.744

98.179

0.41
  pilQ Acinetobacter baumannii strain A118

35.616

100

0.379
  pilQ Acinetobacter baumannii D1279779

35.616

100

0.379
  comQ Acinetobacter baylyi ADP1

36.396

100

0.375
  pilQ Pseudomonas aeruginosa PAK

37.05

100

0.375