Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   J4N45_RS02180 Genome accession   NZ_CP071850
Coordinates   408556..409782 (-) Length   408 a.a.
NCBI ID   WP_252014637.1    Uniprot ID   -
Organism   Vibrio sp. SCSIO 43140     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 403556..414782
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J4N45_RS02140 (J4N45_02135) rpsP 403769..404017 (+) 249 WP_042475851.1 30S ribosomal protein S16 -
  J4N45_RS02145 (J4N45_02140) rimM 404064..404594 (+) 531 WP_042476112.1 ribosome maturation factor RimM -
  J4N45_RS02150 (J4N45_02145) trmD 404630..405379 (+) 750 WP_252013339.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  J4N45_RS02155 (J4N45_02150) rplS 405422..405775 (+) 354 WP_006074418.1 50S ribosomal protein L19 -
  J4N45_RS02160 (J4N45_02155) yacG 406030..406224 (-) 195 WP_128647938.1 DNA gyrase inhibitor YacG -
  J4N45_RS02165 (J4N45_02160) zapD 406261..407001 (-) 741 WP_234494579.1 cell division protein ZapD -
  J4N45_RS02170 (J4N45_02165) coaE 407033..407641 (-) 609 WP_252013341.1 dephospho-CoA kinase -
  J4N45_RS02175 (J4N45_02170) pilD 407641..408513 (-) 873 WP_252013343.1 A24 family peptidase Machinery gene
  J4N45_RS02180 (J4N45_02175) pilC 408556..409782 (-) 1227 WP_252014637.1 type II secretion system F family protein Machinery gene
  J4N45_RS02185 (J4N45_02180) pilB 409795..411486 (-) 1692 WP_252013345.1 type IV-A pilus assembly ATPase PilB Machinery gene
  J4N45_RS02190 (J4N45_02185) - 411489..411920 (-) 432 WP_252013347.1 pilin -
  J4N45_RS02195 (J4N45_02190) nadC 412182..413072 (-) 891 WP_234494573.1 carboxylating nicotinate-nucleotide diphosphorylase -
  J4N45_RS02200 (J4N45_02195) ampD 413207..413788 (+) 582 WP_252013350.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 45085.89 Da        Isoelectric Point: 10.4355

>NTDB_id=548316 J4N45_RS02180 WP_252014637.1 408556..409782(-) (pilC) [Vibrio sp. SCSIO 43140]
MVGKTEPTLSAFHWKGVNNQGKKVSGQTLAITEMEARASLKQQHIQVRKIKRRSLSTWTRLTQRINSKDITVLTRQLSTM
LSTGIPIVHAIKLIADNQSKAEMKSVLSQISKGLEAGTPISRVMQVASRHFDSFYVDMVATGENSGNLAGVFERLADYRE
KQEMLRSKVVKALIYPVMILLVSLGVTYLMLTTVVPEFESMFRGFNASLPWFTVQVLNLSRWFQENGFLVVNLVIISTLG
LKVARQRSFAIRLSTSRLALTVPIIGQVITKASIAKFSRTLSTSFSAGIPILSSIQTSAKTADNLFYQQVITSIHTDIVA
GVPIHLAMRQANAFPEMVLQMVMIGEESGTLDDMLNRVASIYEAEVDNTVDNLGKILEPFIIVFLGTLVGGLVVAMYLPI
FNLMTVIG

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=548316 J4N45_RS02180 WP_252014637.1 408556..409782(-) (pilC) [Vibrio sp. SCSIO 43140]
ATAGTGGGTAAGACTGAGCCAACACTAAGCGCATTCCACTGGAAGGGAGTGAACAACCAAGGTAAAAAAGTCTCTGGACA
AACGCTCGCCATCACCGAGATGGAAGCTAGAGCGTCGCTAAAGCAGCAGCATATCCAAGTCCGAAAGATAAAACGCCGTA
GCCTATCTACTTGGACAAGACTGACTCAACGCATCAATAGTAAGGACATTACGGTACTCACTCGACAACTGTCGACCATG
CTCAGTACTGGAATACCGATTGTCCACGCCATTAAGCTCATCGCAGACAATCAATCTAAAGCCGAAATGAAGTCTGTACT
ATCACAGATCAGTAAAGGGCTTGAGGCAGGCACACCGATATCACGAGTCATGCAAGTCGCTAGCCGCCATTTTGACAGCT
TTTACGTTGATATGGTCGCTACGGGAGAAAACTCAGGGAATCTCGCAGGGGTATTTGAACGCTTGGCCGATTATCGGGAA
AAACAAGAAATGCTACGCTCAAAAGTTGTAAAAGCCCTTATCTATCCTGTGATGATTCTTTTGGTCTCACTCGGAGTTAC
CTATCTCATGCTAACCACGGTAGTACCTGAGTTTGAATCCATGTTTCGCGGCTTTAATGCTTCACTGCCATGGTTTACGG
TTCAAGTCCTTAATCTATCAAGATGGTTTCAGGAAAATGGATTCTTAGTCGTTAACCTAGTCATTATTAGCACCTTAGGG
CTAAAAGTCGCGAGGCAACGAAGTTTCGCCATTCGTCTATCAACCAGCCGTTTAGCCCTTACTGTTCCTATTATCGGACA
GGTGATTACCAAGGCATCCATTGCTAAGTTTAGCCGCACACTCTCTACTAGCTTTAGTGCAGGTATCCCAATCTTATCGA
GCATCCAAACCAGTGCAAAGACGGCGGATAACCTTTTCTACCAGCAGGTCATCACATCGATCCACACTGATATTGTTGCG
GGTGTTCCTATCCACTTAGCGATGCGGCAAGCCAATGCTTTCCCAGAAATGGTGTTGCAGATGGTGATGATAGGTGAGGA
GTCTGGCACATTGGATGATATGTTGAATCGCGTTGCATCCATCTACGAAGCAGAAGTCGACAACACGGTGGATAACCTCG
GTAAGATTCTCGAGCCTTTTATCATTGTCTTTTTGGGAACCCTAGTCGGTGGACTTGTAGTCGCAATGTACCTTCCCATC
TTTAACTTAATGACAGTAATAGGCTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(74-196)

Type II secretion system (T2SS), protein F (T2SSF)

(277-399)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Vibrio cholerae strain A1552

66

98.039

0.647
  pilC Vibrio campbellii strain DS40M4

59.801

98.775

0.591
  pilC Acinetobacter baumannii D1279779

37.99

100

0.38
  pilG Neisseria meningitidis 44/76-A

38.5

98.039

0.377
  pilC Acinetobacter baylyi ADP1

37.5

100

0.375
  pilC Legionella pneumophila strain ERS1305867

37.871

99.02

0.375
  pilG Neisseria gonorrhoeae MS11

38.287

97.304

0.373