Detailed information NTG0548315

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: J4N45_RS02175
• Genome accession: NZ_CP071850
• Coordinates: 407641..408513 (-)
• Length: 290 a.a.
• NCBI ID: WP_252013343.1
• Uniprot ID: -
• Organism: Vibrio sp. SCSIO 43140
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 402641..413513

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
J4N45_RS02140 (J4N45_02135)	rpsP	403769..404017 (+)	249	WP_042475851.1	30S ribosomal protein S16	-
J4N45_RS02145 (J4N45_02140)	rimM	404064..404594 (+)	531	WP_042476112.1	ribosome maturation factor RimM	-
J4N45_RS02150 (J4N45_02145)	trmD	404630..405379 (+)	750	WP_252013339.1	tRNA (guanosine(37)-N1)-methyltransferase TrmD	-
J4N45_RS02155 (J4N45_02150)	rplS	405422..405775 (+)	354	WP_006074418.1	50S ribosomal protein L19	-
J4N45_RS02160 (J4N45_02155)	yacG	406030..406224 (-)	195	WP_128647938.1	DNA gyrase inhibitor YacG	-
J4N45_RS02165 (J4N45_02160)	zapD	406261..407001 (-)	741	WP_234494579.1	cell division protein ZapD	-
J4N45_RS02170 (J4N45_02165)	coaE	407033..407641 (-)	609	WP_252013341.1	dephospho-CoA kinase	-
J4N45_RS02175 (J4N45_02170)	pilD	407641..408513 (-)	873	WP_252013343.1	A24 family peptidase	Machinery gene
J4N45_RS02180 (J4N45_02175)	pilC	408556..409782 (-)	1227	WP_252014637.1	type II secretion system F family protein	Machinery gene
J4N45_RS02185 (J4N45_02180)	pilB	409795..411486 (-)	1692	WP_252013345.1	type IV-A pilus assembly ATPase PilB	Machinery gene
J4N45_RS02190 (J4N45_02185)	-	411489..411920 (-)	432	WP_252013347.1	pilin	-
J4N45_RS02195 (J4N45_02190)	nadC	412182..413072 (-)	891	WP_234494573.1	carboxylating nicotinate-nucleotide diphosphorylase	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 32227.46 Da
• Isoelectric Point: 7.5037

>NTDB_id=548315 J4N45_RS02175 WP_252013343.1 407641..408513(-) (pilD) [Vibrio sp. SCSIO 43140]
MDVLIYYPWLFVVFATIFGLIMGSFLNVVIHRLPIMMERGWREECAEAFPEYKITPPEGQYNLSVPRSACPKCKTPIRIL
DNIPVLSWLILKGRCRHCDNKISSRYPLVELLTAAMCGIVAWYLGFSWYSVALIGMTLVLISATFIDLDTMLLPDQLTVP
LLWVGVALALLGISPISLQDSVIGAIAGYLCLWSVYWLFKLATGKEGMGYGDFKLLAALGAWLGWQYLPMIILLSSVVGV
VFGLIQLRMQSKGIDTAFPFGPYLAIAGWVSALWGSQVTYAYLAITTGVY

Nucleotide

• Length: 873 bp

>NTDB_id=548315 J4N45_RS02175 WP_252013343.1 407641..408513(-) (pilD) [Vibrio sp. SCSIO 43140]
ATGGACGTGTTGATTTATTATCCTTGGTTGTTCGTTGTCTTCGCCACCATTTTTGGTTTGATTATGGGCAGCTTTCTCAA
CGTCGTGATTCATCGCTTGCCTATTATGATGGAACGCGGTTGGCGAGAGGAATGTGCCGAGGCTTTTCCAGAGTACAAAA
TCACGCCCCCAGAGGGACAGTACAATCTCAGCGTGCCACGCAGTGCTTGCCCTAAATGTAAGACGCCAATTCGCATCCTA
GATAATATCCCCGTGTTGAGCTGGCTGATCCTAAAAGGCCGCTGTCGCCACTGCGATAACAAGATAAGCAGCCGTTATCC
GTTAGTTGAACTGCTCACCGCCGCAATGTGTGGAATCGTCGCATGGTACTTGGGATTTAGCTGGTACAGTGTTGCGCTTA
TTGGTATGACCTTGGTACTCATCAGTGCGACATTTATCGACCTTGATACTATGTTGCTCCCAGATCAACTCACTGTGCCA
CTGCTTTGGGTTGGGGTCGCATTAGCCTTGTTGGGTATCTCTCCTATCTCACTTCAGGATTCTGTTATTGGCGCCATCGC
GGGTTATCTATGCCTCTGGTCTGTGTACTGGCTGTTCAAGCTAGCAACAGGTAAAGAAGGGATGGGTTATGGTGACTTTA
AACTGCTCGCAGCGCTCGGCGCATGGTTAGGCTGGCAGTATCTTCCTATGATTATTCTACTTTCTTCTGTTGTAGGCGTT
GTGTTTGGTCTCATTCAGCTTAGAATGCAGAGCAAAGGCATCGATACGGCGTTTCCATTTGGCCCTTACCTTGCCATTGC
TGGCTGGGTCAGCGCACTGTGGGGCAGCCAGGTTACGTATGCCTATCTTGCGATAACGACAGGAGTGTATTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-123)

• Type IV leader peptidase family (Peptidase_A24) (137-244)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	72.664	99.655	0.724
pilD	Vibrio cholerae strain A1552	69.444	99.31	0.69
pilD	Acinetobacter baumannii D1279779	50	91.724	0.459
pilD	Acinetobacter nosocomialis M2	50	91.724	0.459
pilD	Neisseria gonorrhoeae MS11	48.462	89.655	0.434