Detailed information
Bioinformatically predicted
Overview
| Name | comEA | Type | Machinery gene |
| Locus tag | J4N39_RS10180 | Genome accession | NZ_CP071848 |
| Coordinates | 2157028..2157321 (-) | Length | 97 a.a. |
| NCBI ID | WP_252018803.1 | Uniprot ID | - |
| Organism | Vibrio sp. SCSIO 43136 | ||
| Function | dsDNA binding (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2152028..2162321
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| J4N39_RS10135 (J4N39_10140) | yfbR | 2152264..2152848 (+) | 585 | WP_252018783.1 | 5'-deoxynucleotidase | - |
| J4N39_RS10140 (J4N39_10145) | - | 2152893..2154221 (+) | 1329 | WP_252018785.1 | anti-phage deoxyguanosine triphosphatase | - |
| J4N39_RS10145 (J4N39_10150) | - | 2154298..2154540 (+) | 243 | WP_252018788.1 | type II toxin-antitoxin system ParD family antitoxin | - |
| J4N39_RS10150 (J4N39_10155) | - | 2154537..2154836 (+) | 300 | WP_252018790.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| J4N39_RS10155 (J4N39_10160) | - | 2154849..2155445 (-) | 597 | WP_286036800.1 | DTW domain-containing protein | - |
| J4N39_RS10160 (J4N39_10165) | rrtA | 2155451..2156002 (+) | 552 | WP_252018794.1 | rhombosortase | - |
| J4N39_RS10165 (J4N39_10170) | - | 2156076..2156363 (+) | 288 | WP_252018796.1 | hypothetical protein | - |
| J4N39_RS10170 (J4N39_10175) | - | 2156425..2156682 (-) | 258 | WP_252018799.1 | CcdB family protein | - |
| J4N39_RS10175 (J4N39_10180) | - | 2156718..2156957 (-) | 240 | WP_252018801.1 | type II toxin-antitoxin system CcdA family antitoxin | - |
| J4N39_RS10180 (J4N39_10185) | comEA | 2157028..2157321 (-) | 294 | WP_252018803.1 | ComEA family DNA-binding protein | Machinery gene |
| J4N39_RS10185 (J4N39_10190) | ppiD | 2157476..2159335 (-) | 1860 | WP_252018805.1 | peptidylprolyl isomerase | - |
| J4N39_RS10190 (J4N39_10195) | - | 2159541..2159813 (-) | 273 | WP_252018807.1 | HU family DNA-binding protein | - |
Sequence
Protein
Download Length: 97 a.a. Molecular weight: 10529.17 Da Isoelectric Point: 6.3725
>NTDB_id=548294 J4N39_RS10180 WP_252018803.1 2157028..2157321(-) (comEA) [Vibrio sp. SCSIO 43136]
MNALKTLLLSIALILSPLSIAEETKADKYEGIEITVNINTATAQELATLLKGIGQSKAEKIVEYRDANGKFKSADELAEV
KGIGNATVEKNRERIKL
MNALKTLLLSIALILSPLSIAEETKADKYEGIEITVNINTATAQELATLLKGIGQSKAEKIVEYRDANGKFKSADELAEV
KGIGNATVEKNRERIKL
Nucleotide
Download Length: 294 bp
>NTDB_id=548294 J4N39_RS10180 WP_252018803.1 2157028..2157321(-) (comEA) [Vibrio sp. SCSIO 43136]
ATGAATGCGTTGAAAACTCTGCTATTGAGTATAGCGTTGATTTTATCGCCACTATCAATTGCCGAAGAAACCAAAGCAGA
TAAGTATGAAGGCATTGAAATCACGGTGAACATCAACACCGCAACCGCCCAAGAGTTGGCAACCTTGCTAAAAGGTATCG
GGCAATCTAAAGCGGAAAAGATCGTTGAATACCGAGATGCCAATGGCAAGTTCAAGTCGGCCGATGAGCTAGCAGAAGTG
AAAGGGATTGGCAATGCGACGGTTGAGAAGAATCGTGAGCGTATCAAGCTCTAG
ATGAATGCGTTGAAAACTCTGCTATTGAGTATAGCGTTGATTTTATCGCCACTATCAATTGCCGAAGAAACCAAAGCAGA
TAAGTATGAAGGCATTGAAATCACGGTGAACATCAACACCGCAACCGCCCAAGAGTTGGCAACCTTGCTAAAAGGTATCG
GGCAATCTAAAGCGGAAAAGATCGTTGAATACCGAGATGCCAATGGCAAGTTCAAGTCGGCCGATGAGCTAGCAGAAGTG
AAAGGGATTGGCAATGCGACGGTTGAGAAGAATCGTGAGCGTATCAAGCTCTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comEA | Vibrio campbellii strain DS40M4 |
64.211 |
97.938 |
0.629 |
| comEA | Vibrio cholerae C6706 |
61.053 |
97.938 |
0.598 |
| comEA | Vibrio cholerae strain A1552 |
61.053 |
97.938 |
0.598 |
| comEA | Vibrio parahaemolyticus RIMD 2210633 |
59.574 |
96.907 |
0.577 |
| comEA | Legionella pneumophila strain ERS1305867 |
41.414 |
100 |
0.423 |
| comEA | Legionella pneumophila str. Paris |
41.414 |
100 |
0.423 |
| comEA/comE1 | Glaesserella parasuis strain SC1401 |
61.667 |
61.856 |
0.381 |
| comEA | Acinetobacter baylyi ADP1 |
51.389 |
74.227 |
0.381 |
| comE1/comEA | Haemophilus influenzae Rd KW20 |
60 |
61.856 |
0.371 |