Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   J4N43_RS15495 Genome accession   NZ_CP071842
Coordinates   3339660..3340769 (-) Length   369 a.a.
NCBI ID   WP_158159526.1    Uniprot ID   -
Organism   Vibrio sp. SCSIO 43009     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 3334660..3345769
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J4N43_RS15465 (J4N43_15375) - 3335471..3336028 (-) 558 WP_005379084.1 L-threonylcarbamoyladenylate synthase -
  J4N43_RS15470 (J4N43_15380) purE 3336228..3336713 (+) 486 WP_005379082.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  J4N43_RS15475 (J4N43_15385) - 3336718..3337851 (+) 1134 WP_053350838.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  J4N43_RS15480 (J4N43_15390) tnpA 3337930..3338364 (-) 435 WP_062730726.1 IS200/IS605 family transposase -
  J4N43_RS15485 (J4N43_15395) - 3338532..3339101 (-) 570 WP_158159527.1 topoisomerase DNA-binding C4 zinc finger domain-containing protein -
  J4N43_RS15490 (J4N43_15400) - 3339178..3339657 (-) 480 WP_005379074.1 DUF494 family protein -
  J4N43_RS15495 (J4N43_15405) dprA 3339660..3340769 (-) 1110 WP_158159526.1 DNA-processing protein DprA Machinery gene
  J4N43_RS15500 (J4N43_15410) - 3340753..3341847 (-) 1095 WP_158159525.1 LysM peptidoglycan-binding domain-containing protein -
  J4N43_RS15505 (J4N43_15415) def 3341986..3342504 (+) 519 WP_158159524.1 peptide deformylase -
  J4N43_RS15510 (J4N43_15420) fmt 3342538..3343485 (+) 948 WP_158159523.1 methionyl-tRNA formyltransferase -
  J4N43_RS15515 (J4N43_15425) rsmB 3343566..3344849 (+) 1284 WP_158159522.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -

Sequence

Protein


Download         Length: 369 a.a.        Molecular weight: 40062.81 Da        Isoelectric Point: 6.7588

>NTDB_id=548223 J4N43_RS15495 WP_158159526.1 3339660..3340769(-) (dprA) [Vibrio sp. SCSIO 43009]
MNRRNNDDLAAWLKLSCLPGIGGVKMNKLLARDTPRNIVNFSPEQLQQLGLTTKQIQAWASTDKEVDACLSWLETSTNHQ
ILTLTDPCYPPQLKQIVAPPPLLFVQGYPTCLSQPQIAMVGSRNASIDGLQHARQFAAEFVQHDFIVTSGLALGIDGHAH
DGALQAGGKTIAVLGSGLENIYPARHRGLAQRVIEHGALVSEFRPNAKPRPENFPRRNRIISGLSLGVLVVEAAKKSGSL
ITARYALEQGREVFALPASINAPNACGGNQLIRHGACLVEKTKDVLDEIQSLLDWSINQSTDLFSTLNDEEELPFPQLLA
NVGSEATPVDILANRTNIPVQEVMMQLLELELSGHVVAVSGGYIRKGRG

Nucleotide


Download         Length: 1110 bp        

>NTDB_id=548223 J4N43_RS15495 WP_158159526.1 3339660..3340769(-) (dprA) [Vibrio sp. SCSIO 43009]
ATGAATCGACGAAATAACGATGATCTCGCTGCCTGGTTAAAACTGAGTTGTTTACCAGGCATTGGCGGCGTCAAAATGAA
TAAGCTACTGGCAAGAGACACGCCACGTAACATCGTAAACTTCTCTCCTGAACAGCTACAACAACTTGGGTTAACAACTA
AGCAAATTCAAGCTTGGGCTTCAACAGATAAAGAAGTCGATGCTTGTTTAAGCTGGCTTGAGACTTCTACAAATCATCAA
ATCCTGACACTGACTGACCCGTGTTATCCACCTCAGCTCAAACAAATCGTTGCACCGCCACCTCTACTTTTTGTTCAAGG
ATACCCTACTTGTCTTTCTCAGCCACAAATCGCGATGGTTGGAAGTCGAAATGCGAGTATTGATGGATTACAGCATGCAC
GTCAGTTTGCTGCAGAGTTTGTTCAGCACGATTTTATTGTCACCAGTGGTCTCGCTTTAGGCATTGATGGTCATGCGCAT
GATGGTGCGTTGCAAGCGGGTGGTAAGACGATTGCGGTGCTAGGATCTGGCTTAGAAAATATTTATCCGGCACGTCATCG
TGGTTTAGCGCAACGTGTTATTGAACATGGGGCTTTGGTGTCTGAGTTTCGGCCTAATGCCAAGCCGCGCCCAGAAAACT
TCCCGCGTCGTAATCGTATTATTAGTGGATTATCGCTTGGTGTACTGGTCGTCGAGGCGGCGAAAAAGAGCGGCTCGTTA
ATTACAGCTCGTTACGCGCTTGAGCAAGGTCGAGAAGTATTTGCTCTGCCAGCGTCAATCAATGCCCCCAATGCCTGCGG
TGGAAACCAGTTGATACGTCATGGCGCTTGCCTCGTAGAAAAGACGAAAGATGTCTTAGATGAAATACAGTCCTTGCTTG
ATTGGTCTATTAATCAGAGTACCGATTTATTTTCTACGTTAAATGATGAAGAAGAATTGCCATTTCCTCAGCTGTTAGCT
AACGTAGGAAGTGAAGCTACACCGGTTGATATTCTTGCAAACAGGACCAATATACCTGTCCAAGAAGTCATGATGCAGCT
CTTAGAGTTAGAACTCTCTGGGCATGTCGTTGCGGTTTCAGGTGGCTATATTCGAAAGGGGAGGGGCTAG

Domains

Predicted by InterproScan.

DprA winged helix domain (DprA_WH)

(317-362)

DNA recombination-mediator protein A (DNA_processg_A)

(77-280)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

82.927

100

0.829
  dprA Vibrio cholerae strain A1552

56.757

100

0.569
  dprA Glaesserella parasuis strain SC1401

46.505

100

0.469
  dprA Legionella pneumophila strain ERS1305867

44.598

97.832

0.436
  dprA Haemophilus influenzae Rd KW20

44.957

94.038

0.423
  dprA Neisseria meningitidis strain C311

36.869

100

0.396
  dprA Neisseria meningitidis MC58

36.869

100

0.396
  dprA Neisseria gonorrhoeae MS11

35.533

100

0.379
  dprA Neisseria gonorrhoeae strain FA1090

35.279

100

0.377