Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   J4N40_RS00215 Genome accession   NZ_CP071840
Coordinates   42389..43498 (+) Length   369 a.a.
NCBI ID   WP_047102571.1    Uniprot ID   -
Organism   Vibrio sp. SCSIO 43097     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 37389..48498
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J4N40_RS00195 (J4N40_00195) rsmB 38309..39592 (-) 1284 WP_047102569.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  J4N40_RS00200 (J4N40_00200) fmt 39673..40620 (-) 948 WP_005379066.1 methionyl-tRNA formyltransferase -
  J4N40_RS00205 (J4N40_00205) def 40654..41172 (-) 519 WP_005379068.1 peptide deformylase -
  J4N40_RS00210 (J4N40_00210) - 41311..42405 (+) 1095 WP_047102570.1 LysM peptidoglycan-binding domain-containing protein -
  J4N40_RS00215 (J4N40_00215) dprA 42389..43498 (+) 1110 WP_047102571.1 DNA-processing protein DprA Machinery gene
  J4N40_RS00220 (J4N40_00220) - 43501..43980 (+) 480 WP_005379074.1 DUF494 family protein -
  J4N40_RS00225 (J4N40_00225) - 44059..44628 (+) 570 WP_047102572.1 topoisomerase DNA-binding C4 zinc finger domain-containing protein -
  J4N40_RS00230 (J4N40_00230) - 44694..45827 (-) 1134 WP_047104450.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  J4N40_RS00235 (J4N40_00235) purE 45832..46317 (-) 486 WP_005379082.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  J4N40_RS00240 (J4N40_00240) - 46517..47074 (+) 558 WP_005379084.1 L-threonylcarbamoyladenylate synthase -
  J4N40_RS00245 (J4N40_00245) hemF 47122..48039 (+) 918 WP_047104448.1 oxygen-dependent coproporphyrinogen oxidase -

Sequence

Protein


Download         Length: 369 a.a.        Molecular weight: 40015.75 Da        Isoelectric Point: 7.0083

>NTDB_id=548141 J4N40_RS00215 WP_047102571.1 42389..43498(+) (dprA) [Vibrio sp. SCSIO 43097]
MNRRNNDDLAAWLKLSCLPGIGGVKMNKLLARDAPRNIVNFSPEQLQQLGLTTKQIQAWASTDKEVDACLSWLEASTNHH
ILTLTDPRYPPQLKQIVAPPPLLFVQGNPTCLSQPQIAMVGSRNASIDGLQHARQFAAEFVQHDFIVTSGLALGIDGHAH
DGALQAGGKTIAVLGSGLENIYPARHRGLAQRVIEHGALVSEFRPNAKPRPENFPRRNRIISGLSLGVLVVEAAKKSGSL
ITARYALEQGREVFALPASINAPNACGGNQLIRHGACLVEKTKDVLDEIQSLLDWSINQSTDLFSTLNDEEELPFPQLLA
NVGSEATPVDILANRTNIPVQEVMMQLLELELSGHVVAVSGGYIRKGRG

Nucleotide


Download         Length: 1110 bp        

>NTDB_id=548141 J4N40_RS00215 WP_047102571.1 42389..43498(+) (dprA) [Vibrio sp. SCSIO 43097]
ATGAATCGACGAAATAACGATGATCTCGCTGCCTGGTTAAAACTGAGTTGTTTACCAGGCATTGGCGGCGTCAAAATGAA
TAAGCTACTGGCAAGAGACGCGCCACGTAACATCGTAAACTTCTCTCCTGAACAGCTACAACAACTTGGGTTAACAACTA
AGCAAATTCAAGCTTGGGCTTCAACAGATAAAGAAGTCGATGCTTGTTTAAGCTGGCTTGAGGCTTCTACAAATCATCAT
ATCCTGACACTGACTGACCCGCGTTATCCACCTCAACTCAAACAAATCGTTGCACCGCCACCTCTACTTTTTGTTCAAGG
AAACCCTACTTGTCTCTCTCAGCCACAAATCGCGATGGTTGGCAGTCGAAATGCGAGTATTGATGGATTACAGCATGCAC
GTCAGTTTGCTGCAGAGTTTGTTCAGCACGATTTTATTGTCACCAGTGGTCTCGCTTTAGGCATTGATGGTCATGCGCAT
GATGGTGCGTTGCAAGCGGGTGGTAAGACGATTGCGGTGCTAGGATCTGGCTTAGAAAATATTTATCCGGCACGTCATCG
TGGTTTAGCGCAACGTGTTATTGAACATGGGGCCTTGGTGTCTGAGTTTCGGCCTAATGCCAAGCCGCGTCCAGAAAACT
TCCCGCGTCGTAATCGTATTATTAGTGGATTATCGCTTGGTGTACTGGTCGTCGAGGCGGCGAAAAAGAGCGGCTCGTTA
ATTACAGCTCGTTACGCGCTTGAGCAAGGTCGAGAAGTATTTGCGCTGCCAGCGTCAATCAATGCCCCCAATGCCTGCGG
TGGAAACCAGTTGATACGTCATGGCGCTTGCCTCGTAGAAAAGACGAAAGATGTCTTAGATGAAATACAGTCCTTGCTTG
ATTGGTCTATTAATCAGAGTACCGATTTATTTTCTACGTTAAATGATGAAGAAGAATTGCCATTTCCTCAGCTGTTAGCT
AACGTAGGAAGTGAAGCTACACCGGTTGATATTCTTGCAAACAGGACCAATATACCTGTCCAAGAAGTCATGATGCAGCT
CTTAGAGTTAGAACTCTCTGGGCATGTCGTTGCGGTTTCAGGTGGCTATATTCGAAAGGGGAGGGGCTAG

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(77-280)

DprA winged helix domain (DprA_WH)

(317-362)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

83.198

100

0.832
  dprA Vibrio cholerae strain A1552

57.027

100

0.572
  dprA Glaesserella parasuis strain SC1401

46.505

100

0.469
  dprA Legionella pneumophila strain ERS1305867

44.875

97.832

0.439
  dprA Haemophilus influenzae Rd KW20

44.957

94.038

0.423
  dprA Neisseria meningitidis strain C311

37.374

100

0.401
  dprA Neisseria meningitidis MC58

37.374

100

0.401
  dprA Neisseria gonorrhoeae MS11

35.787

100

0.382
  dprA Neisseria gonorrhoeae strain FA1090

35.533

100

0.379