Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   EXW53_RS09775 Genome accession   NZ_CP071808
Coordinates   1900575..1900862 (+) Length   95 a.a.
NCBI ID   WP_002148618.1    Uniprot ID   J8DCP1
Organism   Bacillus mycoides strain JAS014     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1895575..1905862
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EXW53_RS09755 (EXW53_09775) - 1896746..1896946 (+) 201 WP_002200812.1 DUF4083 domain-containing protein -
  EXW53_RS09760 (EXW53_09780) - 1896974..1897435 (+) 462 WP_002158230.1 NUDIX hydrolase -
  EXW53_RS09765 (EXW53_09785) nadE 1897485..1898303 (-) 819 WP_002158229.1 ammonia-dependent NAD(+) synthetase -
  EXW53_RS09770 (EXW53_09790) - 1898574..1900454 (+) 1881 WP_215558339.1 ABC transporter permease -
  EXW53_RS09775 (EXW53_09795) abrB 1900575..1900862 (+) 288 WP_002148618.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  EXW53_RS09780 (EXW53_09800) - 1901043..1901993 (+) 951 WP_002158227.1 serine protease -
  EXW53_RS09785 (EXW53_09805) - 1902078..1902179 (+) 102 Protein_1849 IS6 family transposase -
  EXW53_RS09790 (EXW53_09810) ugpC 1902194..1903297 (-) 1104 WP_002200809.1 sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC -
  EXW53_RS09795 (EXW53_09815) - 1903701..1904564 (-) 864 WP_002200808.1 helix-turn-helix domain-containing protein -
  EXW53_RS09800 (EXW53_09820) - 1904634..1905494 (-) 861 WP_002200807.1 AraC family transcriptional regulator -

Sequence

Protein


Download         Length: 95 a.a.        Molecular weight: 10621.33 Da        Isoelectric Point: 5.1423

>NTDB_id=548010 EXW53_RS09775 WP_002148618.1 1900575..1900862(+) (abrB) [Bacillus mycoides strain JAS014]
MKATGIIRKVDELGRIVIPKELRDVLGIQIKSPLEIFVEEDKVILQKYQPYNACQITGDVSDQNISLANGSITVSIEGAK
HVIKEIEQFLNKSEI

Nucleotide


Download         Length: 288 bp        

>NTDB_id=548010 EXW53_RS09775 WP_002148618.1 1900575..1900862(+) (abrB) [Bacillus mycoides strain JAS014]
ATGAAAGCAACAGGAATTATTCGAAAAGTAGATGAATTGGGACGGATAGTTATTCCTAAAGAATTACGAGATGTATTAGG
AATACAAATTAAATCACCACTTGAAATTTTTGTAGAAGAAGACAAAGTCATTTTACAAAAATATCAACCTTACAATGCTT
GTCAAATAACAGGTGATGTTTCAGACCAAAATATTTCATTAGCAAATGGAAGCATTACTGTTAGTATAGAAGGCGCAAAA
CATGTAATAAAAGAAATTGAGCAGTTTTTGAACAAGAGTGAGATTTAG

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-49)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB J8DCP1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

57.778

94.737

0.547