Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   J4G46_RS01965 Genome accession   NZ_CP071771
Coordinates   414038..416173 (+) Length   711 a.a.
NCBI ID   WP_180008923.1    Uniprot ID   -
Organism   Acinetobacter towneri strain GX7     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 409038..421173
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J4G46_RS01945 (J4G46_01945) pilM 411056..412114 (+) 1059 WP_004974460.1 pilus assembly protein PilM Machinery gene
  J4G46_RS01950 (J4G46_01950) pilN 412114..412749 (+) 636 WP_004974461.1 PilN domain-containing protein Machinery gene
  J4G46_RS01955 (J4G46_01955) comO 412746..413453 (+) 708 WP_004974463.1 type 4a pilus biogenesis protein PilO Machinery gene
  J4G46_RS01960 (J4G46_01960) pilP 413453..413977 (+) 525 WP_179997195.1 pilus assembly protein PilP Machinery gene
  J4G46_RS01965 (J4G46_01965) pilQ 414038..416173 (+) 2136 WP_180008923.1 type IV pilus secretin PilQ family protein Machinery gene
  J4G46_RS01970 (J4G46_01970) aroK 416211..416753 (+) 543 WP_004974468.1 shikimate kinase AroK -
  J4G46_RS01975 (J4G46_01975) aroB 416772..417851 (+) 1080 WP_208012110.1 3-dehydroquinate synthase -
  J4G46_RS01980 (J4G46_01980) - 417862..418707 (+) 846 WP_136143922.1 hypothetical protein -

Sequence

Protein


Download         Length: 711 a.a.        Molecular weight: 76789.96 Da        Isoelectric Point: 5.4813

>NTDB_id=547662 J4G46_RS01965 WP_180008923.1 414038..416173(+) (pilQ) [Acinetobacter towneri strain GX7]
MNNLFRQFSIGAVAMAVMQVANAQVSITNIVPMQIPGQGTEIRVMFNGLPPQPAAYQLEQPSRLILDFDKAQQTLKQNSV
AVATKEASSVEVSSDAQRSRLTVNLADAGAFTTRVEGNTFILKINSTTATPVAAVTAQRSAQGVSNIGFQRGGEGEGQVV
IDLLGSNTPVDVQQQGSKIVVRTLGNKVPTHLARRLNVNDFATPVSTIDAHNDGSNGVITIQAAGSYEYMAYQAEDKLTI
SLKRPVDKNPFKPRAAQSYTGKKISLDFQDIEVRRVLQLLADFTGINMVAADTVQGNITLRLKDVPWDQALDIILKTKNL
DKRRNGNVIWIAPVSELIKAEEEEAKAIAQSVKLAPLQTEYIQLNYAKAADIEKLITQGKNASRGGSNTNTGTDPLGDSV
GSLLSPRGTVSVDPRTNTLIINDTSAKIDQIRQMIDLLDVSVKQVMIEARIVRATTDFTKEMGVKWGILSQGITNNNHLL
VGGSDTTLWNLREPEKNDDLGGWKYEIERPQNLNVDLGVTSPGASRIAFGLISLSDFMLDLELSALQADGYGEVISTPKV
LTADKQNAKVASGTQIPYQSSEGGGVNAVSTTEFIDATLSLDVTPSITPDGKVQMQLNITSDSPGAPTPTGQLTINKNAV
NTNVLVDNGETVVLGGIFEQQTANSQTKVPFLGDIPYIGRLFRKDIKSDNKRELLIFVTPRIVNDSVSRNH

Nucleotide


Download         Length: 2136 bp        

>NTDB_id=547662 J4G46_RS01965 WP_180008923.1 414038..416173(+) (pilQ) [Acinetobacter towneri strain GX7]
ATGAACAATTTGTTCCGTCAGTTTTCAATAGGCGCAGTCGCAATGGCAGTGATGCAAGTTGCCAATGCCCAAGTCAGCAT
TACCAACATCGTACCCATGCAAATTCCAGGACAGGGCACCGAAATTCGTGTCATGTTTAATGGTTTGCCACCTCAACCTG
CAGCATATCAGCTGGAACAACCTTCCCGCTTGATTTTAGATTTTGATAAAGCGCAACAAACGCTTAAGCAAAACAGCGTT
GCAGTCGCGACCAAAGAAGCCAGCTCTGTAGAGGTAAGCTCAGATGCACAGCGTTCACGTTTAACTGTGAACTTGGCCGA
TGCGGGCGCATTTACCACGCGTGTTGAAGGCAACACCTTTATTTTAAAAATCAACTCAACAACGGCAACCCCTGTGGCTG
CCGTGACTGCCCAACGTAGTGCGCAAGGTGTATCCAATATTGGTTTCCAGCGTGGCGGTGAAGGCGAAGGTCAGGTGGTG
ATTGATCTACTCGGTAGCAATACGCCTGTAGATGTGCAGCAGCAAGGCAGCAAAATTGTGGTACGTACTTTAGGCAATAA
AGTACCAACACATTTAGCACGTCGTTTAAATGTAAATGACTTTGCAACACCTGTGTCGACCATTGATGCACACAATGATG
GCAGCAATGGCGTGATTACTATTCAAGCTGCAGGCAGCTATGAATATATGGCATATCAGGCAGAAGACAAGCTAACCATC
AGCTTAAAACGCCCTGTCGATAAAAACCCGTTTAAACCGCGTGCAGCGCAAAGCTATACAGGCAAAAAGATTTCACTGGA
TTTCCAAGACATCGAAGTGCGTCGTGTATTGCAGTTATTGGCTGATTTCACAGGCATTAACATGGTGGCAGCAGACACTG
TGCAAGGCAACATTACCTTACGTTTAAAAGATGTACCTTGGGATCAGGCTTTAGATATTATCCTGAAAACCAAAAACTTA
GATAAGCGTCGTAATGGCAACGTGATTTGGATTGCACCTGTTTCTGAATTGATTAAAGCCGAAGAAGAAGAAGCCAAAGC
GATTGCGCAAAGTGTGAAACTGGCGCCACTACAAACTGAATATATTCAATTGAACTATGCCAAAGCGGCAGATATTGAAA
AACTAATTACGCAAGGCAAGAATGCATCACGTGGTGGTTCAAATACCAATACAGGTACTGATCCATTAGGCGATAGCGTT
GGTAGCTTGTTGAGTCCACGCGGTACAGTGTCGGTAGATCCACGTACCAATACCTTAATCATCAACGATACATCGGCAAA
AATTGATCAGATTCGTCAAATGATTGATTTGCTAGATGTATCTGTGAAGCAGGTGATGATTGAAGCACGTATTGTTCGTG
CAACCACAGATTTCACCAAGGAAATGGGGGTGAAGTGGGGCATCTTGTCACAAGGGATTACCAACAATAACCACTTGTTG
GTGGGTGGTAGCGATACGACTTTGTGGAACTTACGTGAACCAGAAAAAAATGATGATTTAGGTGGTTGGAAGTACGAAAT
TGAACGGCCACAAAACCTGAATGTCGATTTGGGTGTGACCAGTCCTGGTGCTAGCCGTATTGCATTTGGTTTAATCAGCT
TGTCTGACTTTATGCTCGATTTGGAGTTGTCTGCATTACAAGCAGATGGTTACGGTGAAGTGATTTCGACACCAAAAGTC
CTGACTGCAGATAAGCAAAATGCCAAAGTGGCATCGGGTACGCAAATTCCGTATCAATCTTCTGAAGGTGGTGGTGTCAA
TGCCGTATCTACCACAGAATTCATTGATGCGACTTTAAGTTTGGATGTGACCCCAAGTATTACGCCTGACGGTAAAGTCC
AAATGCAATTAAATATCACCAGTGACTCGCCAGGTGCACCAACACCTACAGGTCAGCTCACCATTAATAAGAACGCCGTG
AATACCAACGTTTTGGTGGATAATGGTGAAACTGTGGTCTTGGGTGGTATTTTTGAGCAACAAACGGCTAACTCACAAAC
CAAAGTTCCATTCTTGGGCGATATTCCTTATATCGGACGTTTATTCCGTAAAGATATCAAGTCGGACAACAAACGTGAGT
TGCTGATTTTTGTTACACCACGAATTGTTAATGACAGTGTTTCAAGAAATCATTAA

Domains

Predicted by InterproScan.

AMIN domain (AMIN)

(40-120)

Bacterial type II/III secretion system short domain (Secretin_N)

(360-444)

Secretin and TonB N terminus short domain (STN)

(291-333)

Bacterial type II and III secretion system protein (Secretin)

(545-703)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Acinetobacter baumannii D1279779

76.796

100

0.782
  pilQ Acinetobacter baumannii strain A118

76.657

100

0.781
  comQ Acinetobacter baylyi ADP1

74.126

100

0.745
  pilQ Pseudomonas aeruginosa PAK

40.486

98.312

0.398
  pilQ Legionella pneumophila strain ERS1305867

37.589

99.156

0.373
  pilQ Legionella pneumophila strain Lp02

37.589

99.156

0.373