Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   J4G46_RS01950 Genome accession   NZ_CP071771
Coordinates   412114..412749 (+) Length   211 a.a.
NCBI ID   WP_004974461.1    Uniprot ID   A0AAP4M279
Organism   Acinetobacter towneri strain GX7     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 407114..417749
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J4G46_RS01935 (J4G46_01935) - 407461..408264 (+) 804 WP_208012361.1 putative RNA methyltransferase -
  J4G46_RS01940 (J4G46_01940) ponA 408334..410886 (-) 2553 WP_180169773.1 penicillin-binding protein PBP1a -
  J4G46_RS01945 (J4G46_01945) pilM 411056..412114 (+) 1059 WP_004974460.1 pilus assembly protein PilM Machinery gene
  J4G46_RS01950 (J4G46_01950) pilN 412114..412749 (+) 636 WP_004974461.1 PilN domain-containing protein Machinery gene
  J4G46_RS01955 (J4G46_01955) comO 412746..413453 (+) 708 WP_004974463.1 type 4a pilus biogenesis protein PilO Machinery gene
  J4G46_RS01960 (J4G46_01960) pilP 413453..413977 (+) 525 WP_179997195.1 pilus assembly protein PilP Machinery gene
  J4G46_RS01965 (J4G46_01965) pilQ 414038..416173 (+) 2136 WP_180008923.1 type IV pilus secretin PilQ family protein Machinery gene
  J4G46_RS01970 (J4G46_01970) aroK 416211..416753 (+) 543 WP_004974468.1 shikimate kinase AroK -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 23682.07 Da        Isoelectric Point: 6.4746

>NTDB_id=547659 J4G46_RS01950 WP_004974461.1 412114..412749(+) (pilN) [Acinetobacter towneri strain GX7]
MAKINLLPWRDELREKRKKEFIVFCIAAAAVGVLLVALAWFFYNAKLQDQEQANQLVISTNQNLDVQLKSLEGLQEQRNA
IVERMKLIQGLQSQRPIAVRLVDELVRVTPSNMYLTKVSRTGNKFTFEGKAESPNTVAEFLRNLEASPWYRNAFMNSFLA
KEENKDKAPSSVVPRVEESYGTFVVTSDLEEIAIPVTPTESNSTSAAGAAQ

Nucleotide


Download         Length: 636 bp        

>NTDB_id=547659 J4G46_RS01950 WP_004974461.1 412114..412749(+) (pilN) [Acinetobacter towneri strain GX7]
ATGGCAAAGATTAACTTACTCCCTTGGCGCGATGAGCTAAGAGAAAAACGTAAAAAAGAATTTATTGTATTTTGTATTGC
AGCGGCTGCTGTTGGGGTGTTATTGGTGGCTTTGGCGTGGTTCTTCTACAACGCGAAGTTACAAGATCAAGAACAAGCCA
ATCAATTGGTGATCAGTACCAACCAAAACCTAGATGTACAATTAAAATCTTTAGAAGGCTTGCAAGAACAGCGTAATGCT
ATTGTTGAGCGCATGAAGCTTATTCAGGGTCTACAAAGTCAGCGTCCAATTGCCGTGCGTTTGGTGGATGAATTGGTGCG
TGTGACACCAAGCAATATGTACTTAACCAAAGTGAGCCGTACAGGCAATAAATTCACTTTTGAGGGCAAGGCTGAAAGTC
CAAATACGGTGGCTGAATTCTTGCGTAATTTGGAAGCATCGCCGTGGTATCGCAATGCATTTATGAATTCATTCTTAGCT
AAAGAAGAAAATAAAGATAAAGCACCAAGCTCTGTGGTTCCTCGTGTAGAGGAAAGTTACGGTACTTTTGTAGTGACTTC
AGATTTAGAAGAAATTGCAATTCCAGTAACACCAACAGAATCTAATTCAACATCAGCAGCGGGGGCAGCACAATGA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(100-165)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Acinetobacter baumannii D1279779

70.283

100

0.706
  comN Acinetobacter baylyi ADP1

71.078

96.682

0.687