Detailed information    

insolico Bioinformatically predicted

Overview

Name   comO   Type   Machinery gene
Locus tag   J4G46_RS01955 Genome accession   NZ_CP071771
Coordinates   412746..413453 (+) Length   235 a.a.
NCBI ID   WP_004974463.1    Uniprot ID   A0AB35LWR4
Organism   Acinetobacter towneri strain GX7     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 407746..418453
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J4G46_RS01940 (J4G46_01940) ponA 408334..410886 (-) 2553 WP_180169773.1 penicillin-binding protein PBP1a -
  J4G46_RS01945 (J4G46_01945) pilM 411056..412114 (+) 1059 WP_004974460.1 pilus assembly protein PilM Machinery gene
  J4G46_RS01950 (J4G46_01950) pilN 412114..412749 (+) 636 WP_004974461.1 PilN domain-containing protein Machinery gene
  J4G46_RS01955 (J4G46_01955) comO 412746..413453 (+) 708 WP_004974463.1 type 4a pilus biogenesis protein PilO Machinery gene
  J4G46_RS01960 (J4G46_01960) pilP 413453..413977 (+) 525 WP_179997195.1 pilus assembly protein PilP Machinery gene
  J4G46_RS01965 (J4G46_01965) pilQ 414038..416173 (+) 2136 WP_180008923.1 type IV pilus secretin PilQ family protein Machinery gene
  J4G46_RS01970 (J4G46_01970) aroK 416211..416753 (+) 543 WP_004974468.1 shikimate kinase AroK -
  J4G46_RS01975 (J4G46_01975) aroB 416772..417851 (+) 1080 WP_208012110.1 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 235 a.a.        Molecular weight: 26502.09 Da        Isoelectric Point: 4.8577

>NTDB_id=547660 J4G46_RS01955 WP_004974463.1 412746..413453(+) (comO) [Acinetobacter towneri strain GX7]
MSLDEFDEVNQDAAVAPKKKMTVEKFFQQFNTLDPNNYGAWPLSVKITCWIFIIFLILALGYFVVIKPKLDAIAAAHTQE
QNLLNEFREKDSKLRNLQQYQAQLQEMEANFNQQLEQLPKETEIPGLVEDINVTGVNSGLKFKNIRLENEIKQEFFIEQP
ISIEATGDYHAFGSFVSGTAALPRIVTMHDFEIVATENKDKKTDIPQVTYKAQAKTYRYVGSADAQTAGNAGGAK

Nucleotide


Download         Length: 708 bp        

>NTDB_id=547660 J4G46_RS01955 WP_004974463.1 412746..413453(+) (comO) [Acinetobacter towneri strain GX7]
ATGAGTCTCGATGAATTTGATGAAGTAAATCAGGATGCTGCTGTTGCTCCGAAAAAGAAAATGACAGTTGAAAAGTTTTT
TCAACAGTTCAATACCCTAGATCCTAACAATTATGGTGCTTGGCCACTTTCGGTCAAAATTACCTGCTGGATTTTTATTA
TTTTCCTGATTCTAGCTTTAGGTTACTTTGTCGTAATCAAGCCAAAGTTAGATGCCATTGCAGCAGCACATACACAAGAA
CAAAACTTGTTAAATGAGTTCCGTGAAAAAGATTCTAAATTGCGTAATTTGCAGCAATACCAAGCGCAATTACAAGAAAT
GGAAGCGAACTTTAACCAACAACTTGAACAATTGCCAAAAGAAACTGAAATTCCAGGTTTAGTTGAAGATATTAACGTCA
CAGGCGTGAATTCAGGTTTGAAGTTTAAAAACATTCGTTTAGAGAACGAAATTAAACAAGAGTTCTTTATTGAACAGCCA
ATTTCAATTGAAGCGACAGGCGATTATCATGCCTTTGGTTCATTCGTAAGCGGTACAGCAGCATTGCCACGTATTGTGAC
CATGCACGACTTTGAAATTGTGGCGACTGAAAATAAAGACAAGAAAACCGATATTCCGCAAGTGACCTATAAAGCACAAG
CAAAAACTTATCGTTATGTCGGCAGTGCAGATGCACAAACCGCGGGTAATGCTGGAGGAGCGAAATAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilO (PilO)

(74-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comO Acinetobacter baylyi ADP1

72.766

100

0.728
  pilO Acinetobacter baumannii D1279779

71.915

100

0.719