Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   J4G44_RS03540 Genome accession   NZ_CP071766
Coordinates   748400..749962 (-) Length   520 a.a.
NCBI ID   WP_207973860.1    Uniprot ID   -
Organism   Acinetobacter towneri strain GX3     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 743400..754962
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J4G44_RS03525 (J4G44_03525) gpmI 744112..745659 (+) 1548 WP_104852912.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -
  J4G44_RS03530 (J4G44_03530) - 745684..746847 (+) 1164 WP_136144310.1 S41 family peptidase -
  J4G44_RS03535 (J4G44_03535) pilR 746897..748330 (-) 1434 WP_178318308.1 sigma-54-dependent transcriptional regulator Regulator
  J4G44_RS03540 (J4G44_03540) pilS 748400..749962 (-) 1563 WP_207973860.1 sensor histidine kinase Regulator
  J4G44_RS03545 (J4G44_03545) - 750003..750638 (-) 636 WP_004975702.1 response regulator transcription factor GacA -
  J4G44_RS03550 (J4G44_03550) - 750854..751945 (+) 1092 WP_131260992.1 serine hydrolase -
  J4G44_RS03555 (J4G44_03555) thrC 752066..753205 (-) 1140 WP_004975706.1 threonine synthase -
  J4G44_RS03560 (J4G44_03560) - 753263..754567 (-) 1305 WP_004975708.1 homoserine dehydrogenase -

Sequence

Protein


Download         Length: 520 a.a.        Molecular weight: 59280.77 Da        Isoelectric Point: 7.1904

>NTDB_id=547590 J4G44_RS03540 WP_207973860.1 748400..749962(-) (pilS) [Acinetobacter towneri strain GX3]
MPDLKQHSELNQYHLGMWYGTYRLLIAFCLLLITLLTFQQLGTQYQHPGLYLYTLVCYFIFSCLQLISYKYIPFKSTQQL
TLFFAVDIIALSSLTFASDGPNLYLSLLFVITIFAASLLLQKRKALAITLIAMIMVIYQHFVGSLLDFSSLNNIGQSALL
AFLFWVVYGSGRIAVRRFQILENLNFSQSLELNRLQNINRYILEQTEMGYLVLDENCHVVLSNPAACHLLGIHPKYAHAT
YPLYKIQPDLFDLFKFDQLQDGEKFQFESQLSHFHVHIQVQKLKVPHQTLTLLALQDGRKINQQVQQLKLAALGQLSASI
AHEIRNPLAAIVQANNLFTGSDAAQQQLLSDMISKQATRIDKIIHDTLSMVKNKQTTPVAIQLNQFLPQFIQEDLPDAAS
QIQLTLTEQLSIQFDESQFRQVLINLIRNAIRHNAAQQPIEITVYPKATYIYIDVRDFGAGVANQDLLYLFQPFFSTEIN
GTGLGLYLSHSFCEANQAKLSYVEQEQGACFRMKCLRAIE

Nucleotide


Download         Length: 1563 bp        

>NTDB_id=547590 J4G44_RS03540 WP_207973860.1 748400..749962(-) (pilS) [Acinetobacter towneri strain GX3]
ATGCCAGATTTAAAACAACATTCTGAGTTAAATCAGTATCATCTTGGCATGTGGTATGGTACTTACCGACTGCTGATTGC
CTTTTGTTTGCTGCTGATTACCCTACTCACCTTTCAGCAGCTTGGCACACAATATCAGCACCCGGGTTTATATCTATACA
CCTTGGTCTGCTATTTTATTTTTAGCTGCCTGCAACTGATCAGCTATAAATATATTCCTTTTAAAAGCACGCAACAACTG
ACCCTGTTTTTTGCAGTCGATATTATCGCGCTCAGTAGCCTGACTTTTGCGAGCGATGGCCCTAATTTATATTTAAGTCT
GCTGTTTGTGATCACGATTTTTGCAGCATCACTCTTGCTGCAAAAGCGTAAAGCCTTAGCCATTACCCTCATCGCGATGA
TTATGGTGATTTACCAACACTTTGTTGGGAGTTTGCTGGACTTTTCATCGCTAAATAATATTGGTCAAAGTGCGCTATTG
GCATTTTTATTTTGGGTGGTTTATGGCAGTGGACGTATTGCAGTACGGCGTTTCCAAATTTTAGAAAATCTAAATTTTTC
GCAATCTTTGGAATTAAACCGCCTACAAAATATCAACCGTTATATTTTAGAACAAACCGAAATGGGCTATTTGGTTTTAG
ATGAAAATTGCCATGTCGTCCTCAGTAACCCTGCAGCCTGTCATCTGTTGGGGATTCATCCTAAATATGCGCACGCGACC
TATCCATTGTATAAAATTCAGCCCGATTTATTTGATCTGTTCAAATTTGATCAATTGCAAGATGGAGAAAAATTTCAATT
CGAGTCGCAACTGAGTCATTTTCATGTGCATATTCAGGTACAAAAACTCAAAGTGCCACATCAAACGCTGACTTTATTGG
CGCTGCAGGATGGACGTAAAATCAATCAGCAAGTCCAGCAACTCAAATTAGCCGCCTTAGGACAACTCTCTGCCAGTATT
GCACACGAAATTCGCAACCCGTTGGCAGCCATTGTACAAGCCAACAATTTATTTACAGGCAGTGATGCAGCACAGCAACA
ATTGCTGTCCGACATGATCAGCAAACAAGCGACACGGATTGATAAAATTATTCACGATACGCTGAGCATGGTCAAAAATA
AACAAACCACGCCTGTCGCGATTCAGCTCAATCAATTTTTGCCACAATTCATTCAGGAAGATTTACCTGATGCAGCGAGT
CAAATTCAGCTTACACTGACCGAACAACTGAGTATTCAGTTTGATGAATCGCAGTTTCGCCAAGTGCTAATTAATCTGAT
TCGTAACGCCATTCGGCACAATGCTGCACAACAACCTATTGAGATTACGGTCTATCCGAAAGCAACTTATATTTATATTG
ATGTGCGGGATTTTGGTGCAGGTGTCGCCAATCAAGATCTCCTCTATCTGTTCCAGCCATTTTTCAGTACCGAAATCAAT
GGAACTGGTTTAGGATTGTATCTATCGCATAGTTTTTGTGAGGCGAATCAAGCCAAGCTGAGCTATGTAGAACAAGAACA
AGGCGCATGTTTCAGGATGAAATGTCTACGTGCCATTGAATAA

Domains

Predicted by InterproScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(312-373)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(415-514)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Acinetobacter baumannii strain A118

59.406

97.115

0.577