Detailed information NTG0547306

Bioinformatically predicted

Overview

• Name: covR
• Type: Regulator
• Locus tag: J3S98_RS06685
• Genome accession: NZ_CP071729
• Coordinates: 1316555..1317247 (+)
• Length: 230 a.a.
• NCBI ID: WP_011676631.1
• Uniprot ID: A0A0M2ZTN8
• Organism: Lactococcus cremoris strain FM-YL11
• Function: repress the expression of comX (predicted from homology) Competence regulation

Genomic Context

Location: 1311555..1322247

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
J3S98_RS06655 (J3S98_06655)	arsC	1312211..1312615 (+)	405	WP_021165525.1	arsenate reductase (thioredoxin)	-
J3S98_RS06660 (J3S98_06660)	-	1312727..1313563 (+)	837	WP_021165524.1	metallophosphoesterase	-
J3S98_RS06665 (J3S98_06665)	-	1313656..1314567 (+)	912	Protein_1288	CHAP domain-containing protein	-
J3S98_RS06670 (J3S98_06670)	-	1314804..1315166 (+)	363	Protein_1289	TIGR02328 family protein	-
J3S98_RS06675 (J3S98_06675)	-	1315490..1315735 (+)	246	WP_011676633.1	type B 50S ribosomal protein L31	-
J3S98_RS06680 (J3S98_06680)	-	1315868..1316398 (+)	531	WP_011834860.1	DUF177 domain-containing protein	-
J3S98_RS06685 (J3S98_06685)	covR	1316555..1317247 (+)	693	WP_011676631.1	response regulator transcription factor	Regulator
J3S98_RS06690 (J3S98_06690)	covS	1317260..1318732 (+)	1473	WP_063283897.1	HAMP domain-containing histidine kinase	Regulator
J3S98_RS06695 (J3S98_06695)	-	1318918..1320159 (+)	1242	WP_015082643.1	ammonium transporter	-
J3S98_RS06700 (J3S98_06700)	-	1320244..1320585 (+)	342	WP_011676628.1	P-II family nitrogen regulator	-
J3S98_RS06705 (J3S98_06705)	murD	1320754..1322103 (+)	1350	WP_021165520.1	UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase	-

Sequence

Protein

• Length: 230 a.a.
• Molecular weight: 26654.33 Da
• Isoelectric Point: 5.1273

>NTDB_id=547306 J3S98_RS06685 WP_011676631.1 1316555..1317247(+) (covR) [Lactococcus cremoris strain FM-YL11]
MASKKILIIEDEKNLARFVSLELEHEGYATEIKDNGRSGLEEATSKDYDLILLDLMLPELDGFEVARRLRKEKDTPIIMM
TARDSTMDRVAGLDIGADDYITKPFAIEELLARVRAFFRREEHGHAVERAENTSFRDLVIDKTNRTVHRGKKVIDLTRRE
YDLLLTLMQNVGDVVTREHLVSQVWGYEEGTETNVVDVYIRYLRNKIDVEGQDSYIQTVRGLGYVMRERK

Nucleotide

• Length: 693 bp

>NTDB_id=547306 J3S98_RS06685 WP_011676631.1 1316555..1317247(+) (covR) [Lactococcus cremoris strain FM-YL11]
ATGGCATCAAAGAAAATTTTGATTATTGAGGATGAAAAGAATTTAGCTCGTTTCGTCTCATTAGAATTAGAGCATGAAGG
CTATGCCACTGAGATTAAAGATAACGGACGTTCTGGGCTTGAAGAAGCAACTTCAAAAGATTATGATTTAATCTTGCTTG
ATTTGATGCTTCCTGAACTTGATGGTTTTGAAGTTGCCCGCCGTTTGCGCAAAGAAAAAGATACTCCAATTATTATGATG
ACCGCGCGTGATTCAACAATGGACCGTGTTGCCGGTCTTGATATTGGAGCAGATGATTATATTACTAAGCCTTTTGCGAT
TGAAGAACTTTTGGCTCGTGTTCGTGCATTCTTCCGTCGTGAAGAACATGGTCATGCTGTAGAACGTGCTGAAAACACTT
CTTTTCGTGATCTTGTAATTGACAAAACAAATCGTACCGTTCACCGCGGTAAAAAAGTAATTGATTTGACGCGTCGTGAA
TACGATCTTCTTTTGACGTTGATGCAAAATGTTGGGGATGTTGTCACTCGCGAACATTTAGTTTCACAAGTTTGGGGATA
TGAAGAAGGAACGGAAACAAATGTTGTTGATGTATATATCCGCTATCTTAGAAATAAAATTGATGTTGAAGGACAAGACA
GCTATATTCAAACCGTTCGTGGTTTGGGTTATGTGATGCGTGAACGCAAATAA

Domains

Predicted by InterproScan.

• Response regulator receiver domain (Response_reg) (6-115)

• Transcriptional regulatory protein, C terminal (Trans_reg_C) (153-226)

3D structure

• AlphaFold DB: A0A0M2ZTN8

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
covR	Lactococcus lactis subsp. lactis strain DGCC12653	99.565	100	0.996
covR	Streptococcus salivarius strain HSISS4	68.421	99.13	0.678
vicR	Streptococcus mutans UA159	45.887	100	0.461
micA	Streptococcus pneumoniae Cp1015	43.478	100	0.435
ciaR	Streptococcus mutans UA159	37.611	98.261	0.37
ciaR	Streptococcus pneumoniae Rx1	36.726	98.261	0.361
ciaR	Streptococcus pneumoniae D39	36.726	98.261	0.361
ciaR	Streptococcus pneumoniae R6	36.726	98.261	0.361
ciaR	Streptococcus pneumoniae TIGR4	36.726	98.261	0.361