Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   J0X00_RS10555 Genome accession   NZ_CP071708
Coordinates   942299..943717 (-) Length   472 a.a.
NCBI ID   WP_136485262.1    Uniprot ID   -
Organism   Vibrio sp. ABG19     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 937299..948717
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J0X00_RS10535 (J0X00_10535) - 937991..938830 (-) 840 WP_136485254.1 Dam family site-specific DNA-(adenine-N6)-methyltransferase -
  J0X00_RS10540 (J0X00_10540) - 938945..940432 (-) 1488 WP_218562654.1 AAA family ATPase -
  J0X00_RS10545 (J0X00_10545) aroB 940479..941564 (-) 1086 WP_136485258.1 3-dehydroquinate synthase -
  J0X00_RS10550 (J0X00_10550) aroK 941592..942110 (-) 519 WP_136485260.1 shikimate kinase AroK -
  J0X00_RS10555 (J0X00_10555) pilQ 942299..943717 (-) 1419 WP_136485262.1 type IV pilus secretin PilQ family protein Machinery gene
  J0X00_RS10560 (J0X00_10560) - 943720..944214 (-) 495 WP_282478027.1 hypothetical protein -
  J0X00_RS10565 (J0X00_10565) pilO 944207..944815 (-) 609 WP_282478028.1 type 4a pilus biogenesis protein PilO -
  J0X00_RS10570 (J0X00_10570) - 944812..945375 (-) 564 WP_282478029.1 PilN domain-containing protein -
  J0X00_RS10575 (J0X00_10575) pilM 945372..946355 (-) 984 WP_282478030.1 type IV pilus assembly protein PilM -

Sequence

Protein


Download         Length: 472 a.a.        Molecular weight: 50930.22 Da        Isoelectric Point: 5.2910

>NTDB_id=547141 J0X00_RS10555 WP_136485262.1 942299..943717(-) (pilQ) [Vibrio sp. ABG19]
MMRCPAAVSRFAWVRLLVVNLLRLLILVLAVSGPLTGLASEQATRSASNTITAKPGESARISLNFQAIALRSVLQLLADY
QGVNLVVSDSVQGELTLRLEDVTWQQALNLILRHSGLEMQRVDGVMLIAPQDEFARQAQHHREQAQLLAPLHSQVVTVHY
ARAQDMAAIIATDGNFGLLSERGSLSVDERTNALLVRDLAPNVADIARMVKALDVPVKQVQIEARIVSINEGDLDELGVR
WGFHSSPAHGRIGASLEENLFAGAGLADESGDLALEDRLNVNLAATSLNASTIAFQVARLGSDTLLDLELSALQRESKAE
IISSPRLITTNQQPAFIEQGTEIPYLESSSSGATSVAFKKAVLSLKVTPQITPDNRLVLDLNVTQDRPGEVVQTGTGEAV
AINTQRIGTQVLVNDGETVVLGGIFQHSVSHTVDKVPLLGDLPWLGALFRRSYQQSGKGELLIFVTPKVVIQ

Nucleotide


Download         Length: 1419 bp        

>NTDB_id=547141 J0X00_RS10555 WP_136485262.1 942299..943717(-) (pilQ) [Vibrio sp. ABG19]
ATGATGCGATGTCCCGCAGCGGTCAGTCGCTTTGCCTGGGTGAGATTGCTGGTTGTGAATCTGCTGCGCCTGCTGATCCT
GGTGCTGGCTGTGAGCGGTCCGCTGACCGGGCTGGCGAGCGAGCAGGCGACCAGATCCGCGTCGAATACCATCACAGCTA
AGCCCGGTGAAAGCGCCCGGATTTCACTTAATTTTCAGGCGATAGCGCTGCGCAGTGTGTTGCAGTTACTGGCGGATTAT
CAGGGGGTCAATCTGGTGGTGTCGGATAGTGTGCAGGGTGAGCTGACGCTGCGCCTGGAGGATGTCACCTGGCAGCAGGC
ACTGAATCTTATCCTGCGACACAGCGGGCTGGAGATGCAACGGGTGGATGGTGTGATGCTGATTGCGCCGCAGGATGAGT
TTGCCCGTCAGGCCCAGCATCACAGGGAGCAGGCGCAGCTCCTGGCACCGCTGCATAGCCAGGTGGTTACGGTGCATTAT
GCCAGAGCGCAGGACATGGCGGCGATCATTGCGACGGACGGTAATTTTGGCCTGCTGTCTGAGCGCGGTTCGCTTAGCGT
TGATGAACGCACCAATGCGCTGCTGGTGCGCGATCTGGCACCGAACGTTGCGGATATCGCGAGAATGGTCAAAGCGCTCG
ATGTGCCGGTCAAGCAGGTGCAGATTGAGGCGCGCATTGTCAGCATCAATGAAGGTGATTTGGATGAGCTGGGGGTACGC
TGGGGATTTCATTCTTCCCCCGCGCATGGCCGGATAGGGGCCTCTCTGGAGGAGAATCTGTTTGCCGGCGCAGGCCTGGC
GGATGAATCGGGCGATCTGGCACTGGAAGACCGTCTCAACGTCAATCTGGCCGCCACCTCACTGAATGCGTCCACGATTG
CGTTTCAGGTGGCGCGTCTTGGCTCTGACACCTTGCTTGATCTTGAACTGTCGGCTTTGCAGCGTGAGTCGAAAGCGGAA
ATTATCTCCAGTCCGCGTCTTATCACCACCAATCAACAGCCGGCTTTTATTGAGCAGGGCACAGAAATTCCGTATCTGGA
GTCGTCGTCGAGCGGGGCGACCAGCGTGGCGTTTAAAAAGGCGGTGCTGAGCCTCAAGGTGACCCCGCAGATTACGCCGG
ATAATCGACTGGTGCTGGATTTGAATGTCACTCAGGACCGGCCGGGGGAAGTGGTGCAGACCGGAACTGGTGAAGCGGTT
GCCATTAACACTCAGCGTATCGGTACCCAGGTGCTGGTTAATGACGGTGAAACCGTGGTGCTGGGCGGTATTTTCCAGCA
CAGTGTCAGCCATACGGTGGATAAGGTGCCGCTGCTGGGGGACTTGCCGTGGCTGGGGGCATTGTTCCGGCGCAGTTACC
AGCAAAGTGGTAAAGGTGAGCTGCTGATCTTCGTCACGCCGAAAGTTGTGATTCAGTAA

Domains

Predicted by InterproScan.

Bacterial type II and III secretion system protein (Secretin)

(312-470)

Bacterial type II/III secretion system short domain (Secretin_N)

(154-219)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Vibrio campbellii strain DS40M4

66.745

90.466

0.604
  pilQ Vibrio cholerae strain A1552

67.381

88.983

0.6
  pilQ Vibrio cholerae O1 biovar El Tor strain E7946

67.381

88.983

0.6
  pilQ Legionella pneumophila strain ERS1305867

47.733

88.771

0.424
  pilQ Legionella pneumophila strain Lp02

47.733

88.771

0.424
  pilQ Pseudomonas aeruginosa PAK

41.463

95.551

0.396
  comQ Acinetobacter baylyi ADP1

41.518

94.915

0.394
  pilQ Acinetobacter baumannii D1279779

37.662

97.881

0.369
  pilQ Acinetobacter baumannii strain A118

37.662

97.881

0.369