Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   J1N58_RS00380 Genome accession   NZ_CP071697
Coordinates   74076..75257 (+) Length   393 a.a.
NCBI ID   WP_207560405.1    Uniprot ID   -
Organism   Streptococcus suis strain 1112S     
Function   require for competence (predicted from homology)   
Unclear

Genomic Context

Location: 69076..80257
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J1N58_RS00365 (J1N58_00365) mutL 70651..72588 (+) 1938 WP_207560404.1 DNA mismatch repair endonuclease MutL -
  J1N58_RS00370 (J1N58_00370) ruvA 72627..73217 (+) 591 WP_024406764.1 Holliday junction branch migration protein RuvA -
  J1N58_RS00375 (J1N58_00375) - 73470..74039 (+) 570 WP_012774893.1 DNA-3-methyladenine glycosylase I -
  J1N58_RS00380 (J1N58_00380) cinA 74076..75257 (+) 1182 WP_207560405.1 competence/damage-inducible protein A Machinery gene
  J1N58_RS00385 (J1N58_00385) recA 75309..76460 (+) 1152 WP_172063701.1 recombinase RecA Machinery gene
  J1N58_RS00390 (J1N58_00390) spx 76620..77018 (+) 399 WP_004195475.1 transcriptional regulator Spx -
  J1N58_RS00395 (J1N58_00395) - 77125..77391 (+) 267 WP_004195477.1 IreB family regulatory phosphoprotein -
  J1N58_RS00400 (J1N58_00400) ruvX 77391..77810 (+) 420 WP_032498174.1 Holliday junction resolvase RuvX -
  J1N58_RS00405 (J1N58_00405) - 77822..78139 (+) 318 WP_004195480.1 DUF1292 domain-containing protein -
  J1N58_RS00410 (J1N58_00410) - 78497..79045 (+) 549 WP_238140022.1 nucleotidyltransferase family protein -
  J1N58_RS00415 (J1N58_00415) comX/sigX 79135..79605 (+) 471 WP_004195486.1 sigma-70 family RNA polymerase sigma factor Regulator
  J1N58_RS00420 (J1N58_00420) rpsJ 79860..80168 (+) 309 WP_002939332.1 30S ribosomal protein S10 -

Sequence

Protein


Download         Length: 393 a.a.        Molecular weight: 42980.83 Da        Isoelectric Point: 4.3747

>NTDB_id=547019 J1N58_RS00380 WP_207560405.1 74076..75257(+) (cinA) [Streptococcus suis strain 1112S]
MKAELIAVGTEILTGQIINTNAQFLSEKCAELGIDVYFHTAVGDNEQRLLSVLEIASKRSELVILCGGLGPTEDDLTKQT
LATFLGRNLVFDELAMAKLDRFFASRPGRVRTPNNERQAQIVEGSQALQNPAGLAVGGMIEQDGVTYIVLPGPPSELKAM
FSESLLPLLSQSQQQLYSRVLRFFGIGESQLVTVLADLIDNQTDPTLAPYAKVGEVTLRLSTKATSQEEANLRLNQLEEE
ILQHDKLADYFYAYGEDNSLVKTVATRLAEKRQTIAIVEQGTGGLLQAELSLALADQPYFSGGKVIGQLGTESGRLSEEA
DCIRQELQADLGLAVSVFIKPESTEDNVLAKVYLTLATTSGISQKEIDLGGYSWQYLRQLACLQAWDFVRNTL

Nucleotide


Download         Length: 1182 bp        

>NTDB_id=547019 J1N58_RS00380 WP_207560405.1 74076..75257(+) (cinA) [Streptococcus suis strain 1112S]
ATGAAAGCAGAACTAATCGCCGTTGGGACGGAGATTTTGACAGGTCAAATCATTAATACCAATGCTCAGTTCCTTTCGGA
GAAATGTGCAGAGCTGGGAATTGATGTTTATTTCCACACAGCTGTTGGAGATAATGAACAGAGGCTTTTGTCTGTACTGG
AGATAGCCAGCAAGCGTAGTGAGCTAGTCATTCTCTGTGGAGGACTTGGTCCAACAGAAGATGACTTGACTAAGCAGACC
CTGGCGACCTTCTTAGGTAGAAATCTTGTGTTTGATGAGTTGGCTATGGCAAAATTAGACCGTTTCTTTGCCAGTCGCCC
AGGTCGTGTCCGTACACCAAATAATGAACGTCAGGCACAGATTGTGGAGGGAAGTCAGGCGCTTCAGAATCCAGCTGGTT
TAGCTGTTGGTGGTATGATTGAGCAAGATGGTGTAACCTATATTGTTTTGCCTGGCCCACCAAGTGAGCTCAAGGCCATG
TTTTCTGAGAGTCTCTTACCTTTACTGTCCCAATCTCAGCAGCAACTTTACTCGCGTGTCCTACGCTTTTTTGGCATTGG
TGAAAGTCAGTTGGTGACAGTTTTGGCGGACTTGATTGACAATCAAACTGACCCAACTCTTGCTCCTTATGCAAAAGTTG
GAGAGGTGACTTTACGCTTGTCCACCAAAGCGACCAGCCAAGAAGAAGCAAATCTACGTTTGAATCAGTTGGAAGAAGAA
ATCTTACAACATGACAAACTGGCAGACTATTTCTATGCCTACGGAGAGGACAATAGTTTGGTCAAAACGGTAGCGACTCG
TTTGGCGGAGAAAAGACAAACCATTGCTATCGTCGAACAGGGGACAGGTGGTCTCTTGCAAGCTGAATTGAGTTTGGCTT
TGGCTGACCAGCCTTATTTTAGCGGAGGAAAAGTCATCGGTCAGCTAGGGACAGAATCGGGCAGGCTATCAGAGGAAGCT
GACTGCATTCGGCAGGAGCTGCAAGCTGATTTAGGTTTGGCTGTGTCTGTGTTTATCAAACCGGAATCAACAGAGGACAA
CGTACTTGCAAAAGTATACCTCACTTTGGCTACGACCTCGGGTATTTCCCAAAAAGAGATAGATTTAGGTGGTTATTCGT
GGCAATACCTTCGCCAGCTTGCTTGTCTGCAGGCCTGGGATTTTGTACGAAACACTTTGTGA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(178-253)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus suis isolate S10

96.438

100

0.964
  cinA Streptococcus mitis SK321

56.49

100

0.598
  cinA Streptococcus pneumoniae TIGR4

56.49

100

0.598
  cinA Streptococcus pneumoniae Rx1

56.49

100

0.598
  cinA Streptococcus pneumoniae R6

56.49

100

0.598
  cinA Streptococcus mitis NCTC 12261

56.25

100

0.595
  cinA Streptococcus pneumoniae D39

56.25

100

0.595
  cinA Streptococcus mutans UA159

56.934

100

0.595
  cinA Bacillus subtilis subsp. subtilis str. 168

41.176

99.491

0.41