Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   I8J32_RS00910 Genome accession   NZ_CP071518
Coordinates   199849..201105 (+) Length   418 a.a.
NCBI ID   WP_200614216.1    Uniprot ID   A0A974Y0W8
Organism   Agrilutibacter solisilvae strain R19     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 194849..206105
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I8J32_RS00890 (I8J32_000890) - 195501..196235 (+) 735 WP_200614210.1 hypothetical protein -
  I8J32_RS00895 (I8J32_000895) - 196502..196879 (+) 378 WP_200614212.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  I8J32_RS00900 (I8J32_000900) - 197592..197966 (+) 375 WP_200614214.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  I8J32_RS00905 (I8J32_000905) pilB 198149..199843 (+) 1695 WP_200614482.1 type IV-A pilus assembly ATPase PilB Machinery gene
  I8J32_RS00910 (I8J32_000910) pilC 199849..201105 (+) 1257 WP_200614216.1 type II secretion system F family protein Machinery gene
  I8J32_RS00915 (I8J32_000915) - 201130..201993 (+) 864 WP_200614218.1 A24 family peptidase -
  I8J32_RS00920 (I8J32_000920) - 201990..202334 (+) 345 WP_200614219.1 hypothetical protein -
  I8J32_RS00925 (I8J32_000925) coaE 202392..203021 (+) 630 WP_200614220.1 dephospho-CoA kinase -
  I8J32_RS00930 (I8J32_000930) - 203113..204024 (-) 912 WP_245156462.1 Nudix family hydrolase -

Sequence

Protein


Download         Length: 418 a.a.        Molecular weight: 45075.19 Da        Isoelectric Point: 10.0133

>NTDB_id=545906 I8J32_RS00910 WP_200614216.1 199849..201105(+) (pilC) [Agrilutibacter solisilvae strain R19]
MSASRTAAKPAATRSREALTQFVWVGKDKRGVVMKGEQSAKSANMVRAELRRQGITPGSVKAKPKPLFGTGGGSIKAKDI
AVFSRQIATMMKSGVPIVNALEIIGNGQKNQKMKTMIEALHTDIAGGSSIYEAMSKHPVQFDELYRNLVKAGEAAGVLET
VLETVATYKENMETLKGKIKKALFYPATIIAVAILVCGILLVFVVPQFREAFKSYGADLPAFTELVFGISEFAVRWWWAI
LFVAIGAIGGFIFAMKRSPALAHTVDKMMLKLPILGQVLHNASIARFARTLAVTFAAGVPLVEALDTVAGATGNTVYEQA
VHRMKNDVAVGYPVHVSMSQVNLFPHMVVQMTAIGEEAGALDTMLFKVAEFYEQEVNNAVDALSSLIEPMVMVVIGTMVG
ALVIAMYLPIFKLAMTVG

Nucleotide


Download         Length: 1257 bp        

>NTDB_id=545906 I8J32_RS00910 WP_200614216.1 199849..201105(+) (pilC) [Agrilutibacter solisilvae strain R19]
ATGTCCGCATCCCGCACCGCCGCCAAGCCCGCTGCCACACGATCGCGAGAAGCGCTCACCCAGTTTGTCTGGGTGGGCAA
GGACAAGCGCGGCGTCGTCATGAAGGGAGAACAGTCGGCCAAGAGCGCCAACATGGTGCGGGCCGAACTGCGCCGCCAGG
GGATCACCCCGGGCTCGGTCAAGGCCAAGCCCAAGCCGTTGTTCGGCACCGGCGGCGGCTCGATCAAGGCCAAGGACATC
GCCGTGTTCAGCCGCCAGATCGCCACGATGATGAAGTCGGGCGTGCCGATCGTGAACGCGCTGGAGATCATCGGCAATGG
TCAGAAGAACCAGAAGATGAAGACCATGATCGAGGCCCTGCACACGGACATCGCAGGCGGCTCCTCGATCTACGAGGCCA
TGAGCAAGCACCCGGTGCAGTTCGACGAGCTGTATCGCAACCTGGTGAAGGCGGGTGAAGCCGCCGGTGTACTCGAGACC
GTGCTGGAAACGGTCGCGACGTACAAGGAAAACATGGAAACCCTCAAGGGCAAGATCAAGAAGGCCCTGTTCTACCCCGC
GACGATCATCGCCGTGGCCATCCTGGTCTGCGGCATCCTGCTGGTGTTCGTGGTCCCGCAGTTCCGCGAAGCGTTCAAGA
GCTACGGCGCCGACCTGCCGGCCTTCACCGAACTGGTGTTCGGCATATCCGAATTCGCGGTCCGATGGTGGTGGGCGATC
CTGTTCGTGGCGATCGGCGCGATCGGCGGCTTCATCTTCGCGATGAAGCGCTCGCCGGCGCTGGCGCATACGGTCGACAA
GATGATGCTGAAGCTGCCCATCCTCGGGCAGGTCCTGCACAACGCCTCGATCGCCCGCTTCGCGCGCACCCTGGCCGTCA
CCTTCGCCGCGGGCGTGCCGCTGGTGGAAGCCCTCGACACCGTGGCCGGCGCCACCGGCAACACGGTCTACGAGCAGGCC
GTGCACCGCATGAAGAACGACGTGGCGGTGGGTTATCCGGTCCACGTGTCGATGAGCCAGGTCAACCTGTTCCCGCACAT
GGTCGTGCAGATGACGGCGATCGGCGAAGAGGCCGGCGCCCTGGACACGATGCTGTTCAAGGTCGCCGAGTTCTACGAGC
AGGAAGTCAACAACGCGGTCGACGCACTGTCGAGCCTGATCGAGCCCATGGTGATGGTGGTGATCGGCACGATGGTCGGC
GCCCTCGTCATCGCGATGTACCTGCCGATCTTCAAGCTGGCCATGACGGTCGGCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(83-206)

Type II secretion system (T2SS), protein F (T2SSF)

(287-409)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Legionella pneumophila strain ERS1305867

50.98

97.608

0.498
  pilC Pseudomonas stutzeri DSM 10701

51.515

94.737

0.488
  pilC Acinetobacter baylyi ADP1

47.912

97.368

0.467
  pilC Acinetobacter baumannii D1279779

46.929

97.368

0.457
  pilG Neisseria gonorrhoeae MS11

41.728

96.89

0.404
  pilG Neisseria meningitidis 44/76-A

41.235

96.89

0.4
  pilC Vibrio cholerae strain A1552

39.75

95.694

0.38
  pilC Vibrio campbellii strain DS40M4

39.552

96.172

0.38