Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   JYB88_RS16400 Genome accession   NZ_CP071504
Coordinates   3697211..3698479 (+) Length   422 a.a.
NCBI ID   WP_207324810.1    Uniprot ID   A0A974XJW6
Organism   Shewanella cyperi strain FJAT-53726     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3692211..3703479
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JYB88_RS16380 (JYB88_16380) ampD 3692446..3693000 (-) 555 WP_207324806.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  JYB88_RS16385 (JYB88_16385) nadC 3693224..3694081 (+) 858 WP_207324807.1 carboxylating nicotinate-nucleotide diphosphorylase -
  JYB88_RS16390 (JYB88_16390) - 3694986..3695393 (+) 408 WP_207324808.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  JYB88_RS16395 (JYB88_16395) pilB 3695463..3697172 (+) 1710 WP_207324809.1 type IV-A pilus assembly ATPase PilB Machinery gene
  JYB88_RS16400 (JYB88_16400) pilC 3697211..3698479 (+) 1269 WP_207324810.1 type II secretion system F family protein Machinery gene
  JYB88_RS16405 (JYB88_16405) pilD 3698503..3699417 (+) 915 WP_207324811.1 prepilin peptidase Machinery gene
  JYB88_RS16410 (JYB88_16410) coaE 3699426..3700031 (+) 606 WP_207324812.1 dephospho-CoA kinase -
  JYB88_RS16415 (JYB88_16415) zapD 3700038..3700772 (+) 735 WP_207324813.1 cell division protein ZapD -
  JYB88_RS16420 (JYB88_16420) yacG 3700819..3701028 (+) 210 WP_207321103.1 DNA gyrase inhibitor YacG -
  JYB88_RS16425 (JYB88_16425) mutT 3701035..3701430 (+) 396 WP_207324814.1 8-oxo-dGTP diphosphatase MutT -
  JYB88_RS16430 (JYB88_16430) - 3701627..3702364 (+) 738 WP_207324815.1 substrate-binding periplasmic protein -
  JYB88_RS16435 (JYB88_16435) ric 3702626..3703327 (+) 702 WP_207324816.1 iron-sulfur cluster repair di-iron protein -

Sequence

Protein


Download         Length: 422 a.a.        Molecular weight: 46044.52 Da        Isoelectric Point: 10.0619

>NTDB_id=545775 JYB88_RS16400 WP_207324810.1 3697211..3698479(+) (pilC) [Shewanella cyperi strain FJAT-53726]
MATATASRRAGKGVKAGAKSQPKIFTFTWTGLNKDGKKSSGELRGGSIADIKTILKSQGISPKNVKKKSEGIKLFEAKIN
AMDIAMVTRQIATMMTAGVPLVTTIEMLGRGHEKPKMRELLGTILSEIQSGIPLSDALRPHRLYFDDLYVDLVGAGEHSG
SLDTVFDRIATYKEKAEALKSKIKKAMFYPAAVVIVAIAVTILLLVFVVPQFEEIFKGFGAELPAFTQLVVGISRFLQAY
WYIFLISIVIFVFTFVRLHRNSQTFRDRIDELVLKIPVIGEILHKGAMARFARTLATTFAAGVPLIDGLESAAGASGNAV
YKKALLKIRQEVMAGMQMNVAMRTVNLFPDMLIQMVMIGEESGSLDNMLNKVANIYEMQVDDAVDALSSLIEPMMMVVIG
TIVGGLIVAMYLPIFNLGNVIG

Nucleotide


Download         Length: 1269 bp        

>NTDB_id=545775 JYB88_RS16400 WP_207324810.1 3697211..3698479(+) (pilC) [Shewanella cyperi strain FJAT-53726]
ATGGCGACAGCCACTGCATCCAGAAGAGCCGGTAAAGGGGTAAAAGCAGGCGCCAAAAGCCAACCCAAGATATTTACCTT
CACTTGGACGGGCTTAAATAAAGACGGCAAAAAAAGCAGCGGTGAACTACGAGGCGGCTCAATTGCAGATATAAAAACCA
TCCTCAAGTCTCAAGGTATATCACCCAAAAACGTCAAGAAAAAATCAGAAGGCATAAAGCTGTTCGAAGCCAAGATCAAT
GCTATGGACATTGCTATGGTCACCCGCCAAATAGCGACGATGATGACCGCAGGGGTTCCCTTGGTCACCACAATTGAAAT
GCTTGGCCGTGGCCATGAAAAACCCAAAATGCGGGAATTGCTTGGCACCATTCTCAGTGAAATCCAATCCGGTATCCCAC
TGTCCGATGCTTTGAGACCTCACAGACTGTATTTCGATGATTTATATGTTGACTTGGTTGGCGCCGGTGAGCATTCAGGC
TCCCTTGATACAGTATTCGACCGCATTGCTACTTACAAAGAAAAAGCCGAAGCACTGAAGTCAAAAATCAAAAAGGCGAT
GTTTTACCCCGCTGCCGTAGTGATTGTGGCCATAGCTGTGACAATTCTGCTGCTGGTATTTGTGGTACCCCAATTTGAAG
AGATCTTTAAAGGTTTTGGTGCGGAATTGCCGGCATTTACCCAGCTGGTCGTAGGCATATCCCGCTTTTTGCAGGCCTAT
TGGTACATCTTTTTAATTTCAATTGTGATTTTTGTGTTTACCTTTGTGCGCCTGCACCGTAATTCGCAGACGTTCAGGGA
CAGAATTGACGAACTGGTGTTAAAAATCCCTGTTATAGGTGAGATATTGCATAAAGGTGCCATGGCCCGTTTTGCCCGCA
CCTTAGCGACCACCTTTGCTGCCGGTGTCCCCTTAATCGATGGTCTTGAGTCGGCAGCAGGCGCTTCCGGTAACGCCGTC
TATAAAAAAGCACTGCTCAAAATTCGCCAGGAAGTCATGGCTGGTATGCAAATGAACGTAGCCATGCGCACGGTCAATTT
ATTTCCCGACATGCTGATCCAGATGGTGATGATAGGTGAAGAATCCGGTTCATTGGATAATATGCTGAACAAGGTCGCCA
ACATATATGAGATGCAGGTAGACGATGCCGTTGATGCCCTGTCCAGTTTGATTGAGCCGATGATGATGGTGGTAATTGGC
ACAATTGTTGGTGGGCTGATAGTAGCCATGTATTTGCCCATATTTAACTTGGGTAATGTGATCGGATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(291-413)

Type II secretion system (T2SS), protein F (T2SSF)

(88-210)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

55.668

94.076

0.524
  pilC Acinetobacter baylyi ADP1

50.369

96.445

0.486
  pilC Legionella pneumophila strain ERS1305867

50.743

95.735

0.486
  pilC Acinetobacter baumannii D1279779

51.256

94.313

0.483
  pilC Vibrio cholerae strain A1552

47.236

94.313

0.445
  pilC Vibrio campbellii strain DS40M4

43.035

95.261

0.41
  pilG Neisseria meningitidis 44/76-A

43.342

90.758

0.393
  pilG Neisseria gonorrhoeae MS11

43.455

90.521

0.393