Detailed information NTG0545776

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: JYB88_RS16405
• Genome accession: NZ_CP071504
• Coordinates: 3698503..3699417 (+)
• Length: 304 a.a.
• NCBI ID: WP_207324811.1
• Uniprot ID: A0A974XJT8
• Organism: Shewanella cyperi strain FJAT-53726
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3693503..3704417

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
JYB88_RS16390 (JYB88_16390)	-	3694986..3695393 (+)	408	WP_207324808.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	-
JYB88_RS16395 (JYB88_16395)	pilB	3695463..3697172 (+)	1710	WP_207324809.1	type IV-A pilus assembly ATPase PilB	Machinery gene
JYB88_RS16400 (JYB88_16400)	pilC	3697211..3698479 (+)	1269	WP_207324810.1	type II secretion system F family protein	Machinery gene
JYB88_RS16405 (JYB88_16405)	pilD	3698503..3699417 (+)	915	WP_207324811.1	prepilin peptidase	Machinery gene
JYB88_RS16410 (JYB88_16410)	coaE	3699426..3700031 (+)	606	WP_207324812.1	dephospho-CoA kinase	-
JYB88_RS16415 (JYB88_16415)	zapD	3700038..3700772 (+)	735	WP_207324813.1	cell division protein ZapD	-
JYB88_RS16420 (JYB88_16420)	yacG	3700819..3701028 (+)	210	WP_207321103.1	DNA gyrase inhibitor YacG	-
JYB88_RS16425 (JYB88_16425)	mutT	3701035..3701430 (+)	396	WP_207324814.1	8-oxo-dGTP diphosphatase MutT	-
JYB88_RS16430 (JYB88_16430)	-	3701627..3702364 (+)	738	WP_207324815.1	substrate-binding periplasmic protein	-
JYB88_RS16435 (JYB88_16435)	ric	3702626..3703327 (+)	702	WP_207324816.1	iron-sulfur cluster repair di-iron protein	-
JYB88_RS16440 (JYB88_16440)	-	3703407..3703898 (+)	492	WP_207324817.1	helix-turn-helix domain-containing protein	-

Sequence

Protein

• Length: 304 a.a.
• Molecular weight: 34001.39 Da
• Isoelectric Point: 7.0080

>NTDB_id=545776 JYB88_RS16405 WP_207324811.1 3698503..3699417(+) (pilD) [Shewanella cyperi strain FJAT-53726]
MNNIIDVFSQSPWLFVVVSFIFAACIGSFLNVVIHRFPVMLKREWQQECNQYLSEYHPALVAKVGEAELQKPIDNYPSKY
NLIIPASRCPKCHSSIKAWHNLPILGWMLLKGKCANCQTPISVRYPIVEALTGITVATLAWHFGPSWQFLLAALLTFGLI
AMAGIDLDEMLLPDQITLPWLWLGLLANLNHQFVGIEDALIGAMAGYLSLWSVYWLFKILTGKEGMGYGDFKLMALFGAW
LGWQMLPLIILLSSLVGALVGITMMLSKKLSRENPIPFGPYIAAAGWIALIWGQDIVDWYLAGL

Nucleotide

• Length: 915 bp

>NTDB_id=545776 JYB88_RS16405 WP_207324811.1 3698503..3699417(+) (pilD) [Shewanella cyperi strain FJAT-53726]
ATGAATAATATTATTGACGTGTTCAGCCAGTCTCCTTGGCTGTTTGTAGTGGTGAGCTTTATTTTCGCTGCCTGCATTGG
CAGCTTTCTCAATGTGGTCATTCATCGCTTCCCTGTGATGCTGAAGCGTGAATGGCAGCAGGAGTGCAATCAGTATTTGA
GCGAGTATCATCCAGCCTTGGTCGCCAAAGTGGGCGAGGCTGAGCTGCAAAAGCCAATTGATAATTACCCGAGCAAATAT
AACCTGATTATACCGGCATCACGCTGTCCCAAATGTCACAGCAGCATTAAGGCCTGGCATAATTTGCCTATCCTTGGCTG
GATGCTGCTTAAAGGGAAGTGTGCCAACTGCCAGACTCCAATATCAGTCAGATATCCGATAGTCGAAGCCTTAACCGGCA
TTACAGTCGCGACACTGGCCTGGCATTTCGGCCCCAGCTGGCAGTTTTTATTGGCTGCGCTGTTAACTTTTGGCTTGATA
GCCATGGCCGGAATAGATTTAGACGAAATGTTGTTGCCGGACCAAATAACACTGCCATGGTTGTGGCTCGGTTTGCTGGC
GAATCTCAACCATCAATTTGTCGGGATTGAAGATGCCCTTATTGGCGCAATGGCCGGCTATCTGTCGCTCTGGTCCGTAT
ATTGGCTATTCAAAATACTCACGGGCAAGGAAGGCATGGGCTATGGCGATTTTAAGCTGATGGCCCTGTTTGGCGCTTGG
CTTGGCTGGCAAATGCTGCCGCTCATTATCTTGCTCTCCTCTCTTGTTGGCGCCCTTGTGGGAATCACCATGATGCTGAG
TAAAAAACTCTCCCGTGAAAACCCCATTCCCTTCGGTCCCTATATTGCGGCAGCCGGCTGGATAGCCTTGATTTGGGGAC
AAGACATAGTTGACTGGTACCTCGCCGGTCTGTGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (154-262)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-143)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	49.502	99.013	0.49
pilD	Vibrio cholerae strain A1552	48.667	98.684	0.48
pilD	Acinetobacter nosocomialis M2	46.711	100	0.467
pilD	Acinetobacter baumannii D1279779	46.053	100	0.461
pilD	Neisseria gonorrhoeae MS11	43.214	92.105	0.398