Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   JYB87_RS00110 Genome accession   NZ_CP071503
Coordinates   25095..26108 (+) Length   337 a.a.
NCBI ID   WP_207356548.1    Uniprot ID   -
Organism   Shewanella avicenniae strain FJAT-51800     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 20095..31108
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JYB87_RS00090 (JYB87_00090) rsmB 21012..22295 (-) 1284 WP_207356547.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  JYB87_RS00095 (JYB87_00095) fmt 22298..23251 (-) 954 WP_207354920.1 methionyl-tRNA formyltransferase -
  JYB87_RS00100 (JYB87_00100) def 23276..23788 (-) 513 WP_207354921.1 peptide deformylase -
  JYB87_RS00105 (JYB87_00105) - 23917..25011 (+) 1095 WP_207354922.1 LysM peptidoglycan-binding domain-containing protein -
  JYB87_RS00110 (JYB87_00110) dprA 25095..26108 (+) 1014 WP_207356548.1 DNA-processing protein DprA Machinery gene
  JYB87_RS00115 (JYB87_00115) - 26111..26584 (+) 474 WP_207354923.1 DUF494 family protein -
  JYB87_RS00120 (JYB87_00120) - 26737..27300 (+) 564 WP_207354924.1 type I DNA topoisomerase -
  JYB87_RS00125 (JYB87_00125) - 27390..27953 (+) 564 WP_207354925.1 L-threonylcarbamoyladenylate synthase -
  JYB87_RS00130 (JYB87_00130) hemF 27970..28881 (+) 912 WP_207354926.1 oxygen-dependent coproporphyrinogen oxidase -
  JYB87_RS00135 (JYB87_00135) - 28911..29342 (-) 432 WP_207354927.1 group II truncated hemoglobin -
  JYB87_RS00140 (JYB87_00140) aroE 29494..30330 (+) 837 WP_207354928.1 shikimate dehydrogenase -
  JYB87_RS00145 (JYB87_00145) - 30327..30587 (+) 261 WP_207354929.1 DUF1488 domain-containing protein -

Sequence

Protein


Download         Length: 337 a.a.        Molecular weight: 36216.49 Da        Isoelectric Point: 5.9491

>NTDB_id=545734 JYB87_RS00110 WP_207356548.1 25095..26108(+) (dprA) [Shewanella avicenniae strain FJAT-51800]
MDVQQLRHRLACEPQSVSSRLQASDIAAAEQKVEQALAWQAASQHHFIVTPHSPFYPPLLAELDDAPTVLFCKGEIDSLV
APSIALVGSRDASRNGLQHAYDFGRQLAELGLVVVSGMAAGIDGAAHQGCLMAGGRTLGVLGTGVEQIYPKRHRKLYDDV
MQSGCLISEFWPDVKPYAGNFPKRNRIISGLSLGTLVIEARRKSGSLITARLASEQGREVFALPGSILAGDHQGCHDLIK
NGAKLVDTLADIVEELPPLLRAHLESLPIEPHLTKEDSSELPFKTLLASVGYETTAVDVVVANSGIAVDLVLEQLLELEL
QGFVAAVPGGYVRLKRS

Nucleotide


Download         Length: 1014 bp        

>NTDB_id=545734 JYB87_RS00110 WP_207356548.1 25095..26108(+) (dprA) [Shewanella avicenniae strain FJAT-51800]
ATGGATGTGCAGCAATTACGACACCGATTAGCATGTGAACCGCAATCGGTGTCGTCTAGACTGCAAGCGTCCGATATCGC
TGCGGCTGAACAAAAAGTCGAGCAAGCCTTAGCTTGGCAGGCCGCTTCTCAACATCACTTCATCGTGACACCGCATTCCC
CATTTTACCCACCCTTATTAGCTGAGCTTGATGACGCGCCGACCGTGTTATTTTGTAAAGGCGAAATCGATAGCTTAGTC
GCACCATCAATCGCGCTAGTTGGCAGTCGTGATGCCAGTCGCAATGGACTGCAACATGCCTATGATTTTGGCCGACAACT
GGCAGAGTTGGGGCTGGTGGTGGTCAGCGGGATGGCGGCCGGTATTGATGGTGCCGCGCATCAAGGTTGCTTGATGGCTG
GTGGGCGAACGCTCGGTGTGCTGGGTACCGGCGTGGAACAGATTTATCCCAAGCGTCATCGCAAGCTCTATGACGACGTG
ATGCAGTCTGGCTGCTTGATCAGCGAGTTCTGGCCTGATGTTAAACCCTATGCCGGCAATTTTCCCAAGCGGAACCGCAT
TATCAGTGGCTTATCGCTGGGAACGCTTGTGATAGAAGCGCGCCGAAAAAGTGGTTCATTGATCACCGCAAGACTCGCCA
GTGAGCAAGGCCGAGAAGTTTTTGCTTTACCGGGCAGTATCTTAGCGGGCGACCACCAAGGGTGTCATGATTTGATTAAA
AATGGTGCAAAACTTGTCGACACGCTGGCCGATATAGTGGAAGAGCTGCCGCCTTTATTGCGGGCGCACCTTGAATCTTT
GCCGATTGAGCCCCATTTAACCAAAGAAGACAGCTCCGAGTTGCCATTTAAAACACTGTTAGCTAGTGTAGGGTATGAAA
CCACAGCAGTAGATGTAGTGGTTGCAAACAGTGGTATAGCGGTAGATCTGGTGTTGGAACAGTTGCTTGAGCTTGAACTA
CAAGGGTTTGTAGCGGCTGTACCTGGTGGTTACGTTAGACTTAAGAGGAGCTAG

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(44-247)

DprA winged helix domain (DprA_WH)

(282-330)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

52.716

92.878

0.49
  dprA Vibrio cholerae strain A1552

50.161

92.285

0.463
  dprA Glaesserella parasuis strain SC1401

46.057

94.065

0.433
  dprA Legionella pneumophila strain ERS1305867

47.841

89.318

0.427
  dprA Acinetobacter baylyi ADP1

40.854

97.329

0.398
  dprA Neisseria meningitidis MC58

43.791

90.801

0.398
  dprA Neisseria meningitidis strain C311

43.791

90.801

0.398
  dprA Acinetobacter baumannii D1279779

40.881

94.362

0.386
  dprA Acinetobacter baumannii strain A118

42.525

89.318

0.38