Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   J0P05_RS20560 Genome accession   NZ_CP071466
Coordinates   3954846..3956087 (-) Length   413 a.a.
NCBI ID   WP_053487691.1    Uniprot ID   -
Organism   Priestia megaterium strain H2     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 3949846..3961087
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J0P05_RS20540 (J0P05_20540) spoVS 3950406..3950666 (-) 261 WP_003181955.1 stage V sporulation protein SpoVS -
  J0P05_RS20545 (J0P05_20545) - 3950890..3951687 (-) 798 WP_029320635.1 TIGR00282 family metallophosphoesterase -
  J0P05_RS20550 (J0P05_20550) rny 3951769..3953328 (-) 1560 WP_013058803.1 ribonuclease Y -
  J0P05_RS20555 (J0P05_20555) recA 3953609..3954646 (-) 1038 WP_013058804.1 recombinase RecA Machinery gene
  J0P05_RS20560 (J0P05_20560) cinA 3954846..3956087 (-) 1242 WP_053487691.1 competence/damage-inducible protein A Machinery gene
  J0P05_RS20565 (J0P05_20565) pgsA 3956104..3956688 (-) 585 WP_013058806.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  J0P05_RS20570 (J0P05_20570) - 3956833..3957816 (-) 984 WP_223546233.1 RodZ domain-containing protein -
  J0P05_RS20575 (J0P05_20575) - 3957829..3958620 (-) 792 WP_013058808.1 DUF3388 domain-containing protein -
  J0P05_RS20580 (J0P05_20580) - 3958834..3959094 (-) 261 WP_013058809.1 DUF3243 domain-containing protein -
  J0P05_RS20585 (J0P05_20585) - 3959160..3959885 (-) 726 WP_013058810.1 SDR family oxidoreductase -

Sequence

Protein


Download         Length: 413 a.a.        Molecular weight: 44913.02 Da        Isoelectric Point: 4.9898

>NTDB_id=545548 J0P05_RS20560 WP_053487691.1 3954846..3956087(-) (cinA) [Priestia megaterium strain H2]
MMNAEIIGVGSELLLGQIANTNAQYLSKKLAELGINVYYHTVVGDNAQRLKEVIATAQTRAELIIFTGGLGPTKDDLTKE
TIASVLGVELTTNAEALESIEAYFKQSNRVMTPNNKKQAIVLEGSAVLPNDYGMAPGMGLTVEGKHYMLFPGPPKELYPM
YESYGQEFLAQKLELKESIESRVLRFFGIGESQLETEIEDLLDAQTNPTIAPLAGDGEVTLRLTAKHANAAEAQRMLDEV
EKTISERVGEYLYGYEATSLHNELVKELTAQGLTIASAESLTGGLFSERLTTVSGAGEAVKGSLVAYHYEIKQNILGVSE
HTLNQYGAVSEQCAAEMAQRIQQLYKTDIGIGFTGVAGPSKQEGHPVGTVYIGVAYKDQAPQVYSLQLSGSRQGIRSRTV
NYGCHYVLKMIKK

Nucleotide


Download         Length: 1242 bp        

>NTDB_id=545548 J0P05_RS20560 WP_053487691.1 3954846..3956087(-) (cinA) [Priestia megaterium strain H2]
ATGATGAACGCTGAAATTATTGGAGTCGGCTCTGAGCTGCTGCTTGGACAAATTGCCAATACAAACGCTCAGTATTTATC
GAAAAAATTAGCCGAACTTGGAATTAATGTTTACTATCATACGGTAGTAGGAGATAATGCACAGCGCTTAAAAGAAGTGA
TTGCTACAGCTCAAACGCGTGCAGAGTTAATTATTTTCACAGGCGGGCTTGGTCCTACAAAAGATGATTTAACAAAAGAA
ACAATTGCGAGTGTGCTAGGAGTAGAACTGACAACAAATGCAGAAGCACTTGAAAGCATTGAAGCCTATTTCAAACAGTC
AAATCGTGTCATGACACCTAACAACAAAAAACAGGCAATTGTGCTAGAAGGTTCGGCAGTGCTCCCTAACGATTACGGAA
TGGCTCCAGGTATGGGGCTTACGGTAGAGGGAAAACACTATATGCTATTTCCCGGGCCACCAAAAGAGCTTTATCCAATG
TATGAATCGTATGGTCAAGAATTTTTAGCTCAAAAGCTTGAATTAAAAGAAAGTATTGAATCACGCGTTCTTCGCTTTTT
CGGAATAGGAGAATCACAGCTTGAGACGGAAATTGAAGATTTGCTTGATGCGCAAACCAACCCGACGATTGCGCCGCTAG
CAGGAGATGGAGAAGTGACGCTTCGCTTAACTGCTAAGCACGCTAATGCTGCTGAAGCACAGCGCATGTTAGACGAAGTG
GAAAAAACCATTTCAGAGCGCGTAGGCGAGTATTTATATGGATACGAAGCAACTTCTTTACATAATGAATTGGTAAAAGA
ATTAACGGCACAAGGATTAACGATTGCTTCAGCCGAAAGTTTAACCGGCGGTTTATTCAGCGAACGTTTAACAACTGTTT
CAGGTGCTGGAGAAGCTGTAAAAGGCAGCCTGGTCGCCTATCATTATGAAATCAAGCAAAATATTCTCGGAGTGAGCGAA
CACACGCTGAATCAGTACGGAGCCGTTAGCGAGCAGTGCGCGGCTGAAATGGCTCAGCGTATTCAACAGTTATACAAAAC
GGATATTGGCATCGGGTTTACAGGTGTAGCTGGGCCCTCCAAACAAGAAGGACATCCTGTAGGAACAGTATATATAGGGG
TAGCCTATAAAGATCAAGCTCCTCAAGTTTACAGCCTGCAGCTATCTGGAAGCCGCCAGGGGATTCGTTCACGAACGGTT
AATTATGGCTGTCATTACGTATTAAAGATGATAAAGAAATAA

Domains

Predicted by InterproScan.

Competence-damaged protein (CinA)

(258-410)

Probable molybdopterin binding domain (MoCF_biosynth)

(6-169)

Damage-inducible protein CinA KH domain (CinA_KH)

(181-254)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

59.268

99.274

0.588
  cinA Streptococcus mitis NCTC 12261

46.905

100

0.477
  cinA Streptococcus pneumoniae TIGR4

46.19

100

0.47
  cinA Streptococcus mitis SK321

46.19

100

0.47
  cinA Streptococcus pneumoniae Rx1

45.714

100

0.465
  cinA Streptococcus pneumoniae R6

45.714

100

0.465
  cinA Streptococcus pneumoniae D39

45.476

100

0.462
  cinA Streptococcus mutans UA159

44.878

99.274

0.446
  cinA Streptococcus suis isolate S10

39.418

91.525

0.361