Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   J0W32_RS06585 Genome accession   NZ_CP071317
Coordinates   1376736..1378874 (-) Length   712 a.a.
NCBI ID   WP_206862967.1    Uniprot ID   -
Organism   Acinetobacter indicus strain GXNN15X4     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1371736..1383874
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J0W32_RS06570 (J0W32_06570) - 1374203..1375039 (-) 837 WP_206862911.1 hypothetical protein -
  J0W32_RS06575 (J0W32_06575) aroB 1375052..1376134 (-) 1083 WP_168398886.1 3-dehydroquinate synthase -
  J0W32_RS06580 (J0W32_06580) aroK 1376157..1376699 (-) 543 WP_075167858.1 shikimate kinase AroK -
  J0W32_RS06585 (J0W32_06585) pilQ 1376736..1378874 (-) 2139 WP_206862967.1 type IV pilus secretin PilQ Machinery gene
  J0W32_RS06590 (J0W32_06590) pilP 1378935..1379462 (-) 528 WP_045795346.1 pilus assembly protein PilP Machinery gene
  J0W32_RS06595 (J0W32_06595) pilO 1379462..1380181 (-) 720 WP_005180513.1 type 4a pilus biogenesis protein PilO Machinery gene
  J0W32_RS06600 (J0W32_06600) pilN 1380178..1380813 (-) 636 WP_005180516.1 PilN domain-containing protein Machinery gene
  J0W32_RS06605 (J0W32_06605) pilM 1380813..1381871 (-) 1059 WP_075174946.1 pilus assembly protein PilM Machinery gene

Sequence

Protein


Download         Length: 712 a.a.        Molecular weight: 76841.97 Da        Isoelectric Point: 5.0523

>NTDB_id=544906 J0W32_RS06585 WP_206862967.1 1376736..1378874(-) (pilQ) [Acinetobacter indicus strain GXNN15X4]
MNNLFRQFSMGAVAMAVMQVANAQVSITNIVPMQIPGQGTEIRVMFNGLPPQPAAYQLEQPSRLVLDFDKAQQTLKQASI
PVATREASSVDVSSDAQRARLTVNLAEAGAFTTRVEGNTFILKINSTQAAVTPVTVQQTAQGVSNIGFQRGAEGEGQVVI
DLAGSNTPVDVQQQGSKIIVRTLGNKIPAHLARRLNVNDFATPVSTIDAQNDGGNGVITIQSAGSYEYMAYQAENKLTIS
LKRPVDKNPFKPRAAQSYTGKKISLDFQDIEVRRVLQLLADFTGINMVAADTVQGNITLRLKDVPWDQALDIILKTKNLD
KRRNGNVIWIAPVAELIKAEEEEAKAIAQSVKLAPLQTEYIQLNYAKAADIEKLITDGKNASNSRGGTNSGSGADPLGDS
VGSLLSPRGTVSVDPRTNTLIINDTAQKIDQIRGMIDLLDVSVKQVMIEARIVRATTDFTKEMGVKWGILSQGITNNNHL
LVGGSDTTLWNLREPEFDDERGGYTYEIERPQNLNVDLGVTSPGASRIAFGLISLSDFMLDLELSALQADGYGEVISTPK
VLTADKQQAKVASGTQIPYQSAEGGGVNAVSTTEFIDATLSLDVTPSITPDGKVQMNLNITSDSPGAPTPTGQLTINKNS
INTNVLVDNGETVVLGGIFEQQTANQQTKVPFLGDIPYLGRLFRKDIKSDNKRELLIFVTPRIVNDSVSRNH

Nucleotide


Download         Length: 2139 bp        

>NTDB_id=544906 J0W32_RS06585 WP_206862967.1 1376736..1378874(-) (pilQ) [Acinetobacter indicus strain GXNN15X4]
ATGAACAATTTGTTCCGTCAGTTTTCAATGGGCGCTGTTGCGATGGCCGTCATGCAAGTGGCCAATGCGCAGGTCAGCAT
TACCAATATTGTACCAATGCAAATTCCAGGACAAGGTACTGAAATTCGTGTCATGTTCAATGGCTTGCCACCTCAGCCTG
CAGCCTATCAGCTTGAGCAGCCATCACGTTTGGTGCTGGATTTTGATAAAGCCCAGCAGACCTTAAAACAGGCCAGCATT
CCGGTTGCGACTCGGGAAGCCAGCTCGGTTGATGTCAGTTCCGATGCCCAGCGTGCACGTTTAACGGTTAATCTGGCTGA
AGCGGGTGCTTTTACTACCCGTGTTGAAGGCAATACTTTTATTCTTAAAATTAACAGCACTCAGGCAGCCGTAACGCCAG
TGACGGTACAGCAGACGGCTCAAGGTGTATCGAATATCGGCTTTCAGCGCGGTGCAGAAGGGGAAGGTCAGGTAGTAATT
GACCTGGCAGGCAGCAACACCCCGGTCGATGTACAACAGCAAGGCAGTAAAATTATTGTCCGTACCTTGGGTAATAAAAT
TCCTGCACATCTGGCACGCCGTTTAAACGTCAATGATTTTGCCACCCCGGTATCTACCATTGATGCGCAAAATGATGGTG
GCAATGGGGTAATTACTATTCAGTCTGCCGGAAGCTATGAATATATGGCGTATCAGGCAGAAAATAAACTGACCATTAGC
CTGAAACGTCCGGTAGATAAGAACCCGTTCAAACCGCGTGCAGCACAAAGCTATACCGGCAAAAAGATTTCTTTAGATTT
CCAGGATATTGAAGTGCGTCGTGTGCTGCAGTTACTGGCTGATTTTACCGGAATTAACATGGTTGCCGCCGATACGGTAC
AAGGCAATATCACCTTACGTCTCAAAGATGTGCCGTGGGATCAGGCACTAGATATTATTTTAAAAACCAAAAATCTGGAT
AAACGCCGTAATGGCAATGTGATCTGGATTGCACCCGTCGCAGAACTAATCAAGGCTGAAGAAGAAGAAGCCAAAGCGAT
TGCACAAAGCGTCAAGCTGGCGCCGTTGCAAACCGAATATATTCAGTTAAATTATGCCAAGGCTGCTGATATCGAGAAAC
TGATTACTGATGGTAAAAACGCATCCAATTCTCGAGGCGGCACAAATTCGGGTTCAGGGGCAGATCCACTCGGTGATAGC
GTCGGTAGTCTGCTCAGCCCACGTGGTACGGTGTCAGTCGATCCACGAACCAATACCCTGATTATTAATGATACCGCGCA
AAAGATTGACCAGATTCGCGGCATGATTGACTTGCTGGATGTGTCGGTGAAACAGGTGATGATTGAAGCCCGTATTGTGC
GTGCCACCACTGACTTCACCAAAGAGATGGGGGTGAAGTGGGGTATCCTGTCACAGGGTATCACGAATAATAACCATCTT
TTGGTTGGTGGTAGTGATACCACACTGTGGAATTTACGTGAGCCGGAATTTGACGATGAGCGTGGTGGTTATACCTATGA
AATTGAACGTCCACAAAACTTGAATGTCGATTTGGGGGTCACCAGCCCAGGTGCGAGCCGGATTGCTTTTGGTCTCATCA
GCCTGTCTGACTTTATGCTGGATTTAGAACTGTCTGCCCTACAAGCTGATGGTTATGGTGAAGTGATTTCGACACCGAAA
GTACTGACTGCTGATAAGCAACAGGCCAAAGTGGCTTCAGGTACGCAGATTCCGTATCAGTCTGCTGAAGGAGGCGGTGT
CAATGCGGTATCCACCACAGAGTTTATTGATGCAACTTTAAGTCTGGATGTTACGCCAAGCATTACTCCGGATGGTAAAG
TGCAGATGAACCTGAATATCACCAGTGATAGTCCGGGAGCACCAACGCCGACCGGTCAGCTGACGATTAACAAAAACTCG
ATCAATACCAATGTACTGGTCGATAATGGTGAAACCGTCGTGCTCGGTGGTATTTTTGAGCAGCAGACAGCCAATCAGCA
AACCAAAGTGCCATTCCTGGGGGATATTCCGTATTTAGGCCGTTTATTCCGTAAAGATATTAAATCGGACAATAAACGTG
AGTTGCTGATTTTTGTGACACCACGAATTGTTAATGACAGTGTTTCAAGAAATCATTAA

Domains

Predicted by InterproScan.

AMIN domain (AMIN)

(40-121)

Secretin and TonB N terminus short domain (STN)

(290-332)

Bacterial type II and III secretion system protein (Secretin)

(546-704)

Bacterial type II/III secretion system short domain (Secretin_N)

(359-445)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Acinetobacter baumannii D1279779

77.008

100

0.781
  pilQ Acinetobacter baumannii strain A118

76.87

100

0.779
  comQ Acinetobacter baylyi ADP1

74.23

100

0.744
  pilQ Pseudomonas aeruginosa PAK

40.028

99.298

0.397
  pilQ Legionella pneumophila strain Lp02

38.462

100

0.386
  pilQ Legionella pneumophila strain ERS1305867

38.462

100

0.386