Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   J0W32_RS06600 Genome accession   NZ_CP071317
Coordinates   1380178..1380813 (-) Length   211 a.a.
NCBI ID   WP_005180516.1    Uniprot ID   N9MGL9
Organism   Acinetobacter indicus strain GXNN15X4     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1375178..1385813
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J0W32_RS06580 (J0W32_06580) aroK 1376157..1376699 (-) 543 WP_075167858.1 shikimate kinase AroK -
  J0W32_RS06585 (J0W32_06585) pilQ 1376736..1378874 (-) 2139 WP_206862967.1 type IV pilus secretin PilQ Machinery gene
  J0W32_RS06590 (J0W32_06590) pilP 1378935..1379462 (-) 528 WP_045795346.1 pilus assembly protein PilP Machinery gene
  J0W32_RS06595 (J0W32_06595) pilO 1379462..1380181 (-) 720 WP_005180513.1 type 4a pilus biogenesis protein PilO Machinery gene
  J0W32_RS06600 (J0W32_06600) pilN 1380178..1380813 (-) 636 WP_005180516.1 PilN domain-containing protein Machinery gene
  J0W32_RS06605 (J0W32_06605) pilM 1380813..1381871 (-) 1059 WP_075174946.1 pilus assembly protein PilM Machinery gene
  J0W32_RS06610 (J0W32_06610) ponA 1382043..1384619 (+) 2577 WP_206862912.1 penicillin-binding protein PBP1a -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 23494.92 Da        Isoelectric Point: 7.9757

>NTDB_id=544909 J0W32_RS06600 WP_005180516.1 1380178..1380813(-) (pilN) [Acinetobacter indicus strain GXNN15X4]
MAKINLLPWRDELREKRKKEFIAVCIGAALIGVLAVTLAWFYYNHKLQDQEQANQLVISTNQNLDVQLKSLEGLQEQRNA
IVERMKLIQGLQSQRPVAVRLVDELVRVTPSSMYLTKVARIGNKFTFEGKAESPNTVAEFLRNLEASPWYRNAFMNSFLA
VEENKNKAPSSVVPRVEESYGSFVVTADLDEIALPGTAPASGTQATAGAVQ

Nucleotide


Download         Length: 636 bp        

>NTDB_id=544909 J0W32_RS06600 WP_005180516.1 1380178..1380813(-) (pilN) [Acinetobacter indicus strain GXNN15X4]
ATGGCAAAAATTAACTTACTCCCTTGGCGTGATGAGCTAAGAGAAAAACGAAAAAAAGAATTTATTGCGGTTTGTATTGG
GGCTGCATTAATTGGGGTGCTGGCCGTCACGCTGGCATGGTTCTATTACAATCATAAACTTCAAGATCAGGAACAGGCCA
ATCAGCTGGTGATCAGTACCAACCAGAATCTGGATGTACAGTTAAAGTCGCTGGAAGGCCTGCAAGAGCAGCGTAATGCC
ATTGTCGAGCGCATGAAGCTGATTCAGGGTCTGCAAAGTCAGCGTCCGGTCGCGGTACGTTTGGTCGATGAGCTGGTCCG
CGTTACCCCAAGTAGCATGTATTTGACCAAAGTGGCCCGTATTGGCAATAAATTTACCTTTGAAGGCAAGGCCGAAAGTC
CAAACACGGTAGCAGAGTTCCTGCGTAATCTGGAAGCATCGCCATGGTATCGTAACGCCTTCATGAATTCTTTCTTGGCC
GTTGAAGAAAATAAAAACAAGGCACCAAGTTCGGTTGTTCCACGGGTAGAAGAAAGCTATGGCAGCTTCGTGGTAACGGC
AGATTTGGATGAAATTGCACTTCCAGGCACAGCACCTGCGTCTGGTACTCAAGCAACAGCGGGGGCAGTACAATGA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(100-166)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9MGL9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Acinetobacter baumannii D1279779

71.09

100

0.711
  comN Acinetobacter baylyi ADP1

70.616

100

0.706