Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilO   Type   Machinery gene
Locus tag   J0W32_RS06595 Genome accession   NZ_CP071317
Coordinates   1379462..1380181 (-) Length   239 a.a.
NCBI ID   WP_005180513.1    Uniprot ID   N9KYM2
Organism   Acinetobacter indicus strain GXNN15X4     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1374462..1385181
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J0W32_RS06575 (J0W32_06575) aroB 1375052..1376134 (-) 1083 WP_168398886.1 3-dehydroquinate synthase -
  J0W32_RS06580 (J0W32_06580) aroK 1376157..1376699 (-) 543 WP_075167858.1 shikimate kinase AroK -
  J0W32_RS06585 (J0W32_06585) pilQ 1376736..1378874 (-) 2139 WP_206862967.1 type IV pilus secretin PilQ Machinery gene
  J0W32_RS06590 (J0W32_06590) pilP 1378935..1379462 (-) 528 WP_045795346.1 pilus assembly protein PilP Machinery gene
  J0W32_RS06595 (J0W32_06595) pilO 1379462..1380181 (-) 720 WP_005180513.1 type 4a pilus biogenesis protein PilO Machinery gene
  J0W32_RS06600 (J0W32_06600) pilN 1380178..1380813 (-) 636 WP_005180516.1 PilN domain-containing protein Machinery gene
  J0W32_RS06605 (J0W32_06605) pilM 1380813..1381871 (-) 1059 WP_075174946.1 pilus assembly protein PilM Machinery gene
  J0W32_RS06610 (J0W32_06610) ponA 1382043..1384619 (+) 2577 WP_206862912.1 penicillin-binding protein PBP1a -

Sequence

Protein


Download         Length: 239 a.a.        Molecular weight: 27087.71 Da        Isoelectric Point: 5.1311

>NTDB_id=544908 J0W32_RS06595 WP_005180513.1 1379462..1380181(-) (pilO) [Acinetobacter indicus strain GXNN15X4]
MSLDQYEEMNQDPVAAPKKKMTLDKFLQQWNTLDPNNYGSWPFSVKLTIWIFIIILIAFLGYFLAIKPKLDAISNARAQE
QNLLNEFREKDSKLRNLQQYQAQLQEMEANFNQQLQQLPKETEIPGLVEDVNVTGVNSGLRFKNIRLENEIKQEFFIEQP
ISIEATGDYHAFGSFVSGTAALPRIVTMHDFTITAGENKEKKTDIPQITYVAKAKTYRYVGNTDAQAGNSTTPATGAAQ

Nucleotide


Download         Length: 720 bp        

>NTDB_id=544908 J0W32_RS06595 WP_005180513.1 1379462..1380181(-) (pilO) [Acinetobacter indicus strain GXNN15X4]
ATGAGTCTCGATCAATATGAAGAAATGAATCAGGATCCTGTTGCTGCGCCAAAGAAAAAAATGACGCTGGATAAATTCCT
GCAGCAATGGAATACCTTAGATCCGAATAACTATGGCAGCTGGCCGTTTTCCGTCAAGCTGACCATCTGGATCTTTATCA
TTATTTTAATTGCCTTCCTGGGCTATTTCCTGGCCATCAAGCCGAAGCTGGATGCAATTTCCAATGCGCGTGCACAAGAG
CAGAACCTGCTGAATGAGTTTCGTGAAAAAGATTCCAAACTGCGTAACTTGCAGCAATATCAGGCGCAGTTACAGGAAAT
GGAAGCCAACTTTAACCAGCAGCTACAACAGTTGCCAAAAGAAACCGAAATTCCAGGTCTGGTTGAAGATGTCAACGTTA
CGGGCGTGAATTCAGGCTTAAGATTTAAAAATATCCGTCTGGAAAATGAAATCAAGCAAGAGTTCTTTATCGAGCAGCCA
ATTTCGATTGAAGCCACCGGTGATTATCATGCTTTTGGTTCTTTTGTGAGCGGTACAGCCGCTTTACCGCGAATTGTGAC
CATGCATGATTTCACTATTACTGCCGGTGAAAACAAGGAAAAGAAAACCGATATTCCACAAATTACCTATGTCGCGAAAG
CCAAGACCTATCGCTATGTCGGGAATACCGATGCACAGGCCGGTAATAGTACGACTCCAGCCACAGGAGCAGCACAATGA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilO (PilO)

(74-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9KYM2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilO Acinetobacter baumannii D1279779

69.748

99.582

0.695
  comO Acinetobacter baylyi ADP1

67.213

100

0.686