Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/celA/cilE   Type   Machinery gene
Locus tag   JZY07_RS06915 Genome accession   NZ_CP071305
Coordinates   1382836..1383498 (-) Length   220 a.a.
NCBI ID   WP_024412253.1    Uniprot ID   -
Organism   Streptococcus suis strain SC183     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1377836..1388498
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JZY07_RS06900 (JZY07_06900) - 1378725..1379552 (-) 828 WP_024412255.1 hypothetical protein -
  JZY07_RS06905 (JZY07_06905) - 1379646..1380302 (-) 657 WP_023370708.1 CBS domain-containing protein -
  JZY07_RS11635 - 1380484..1380606 (-) 123 Protein_1332 IS982 family transposase -
  JZY07_RS06910 (JZY07_06910) comEC/celB 1380615..1382852 (-) 2238 WP_024412254.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  JZY07_RS06915 (JZY07_06915) comEA/celA/cilE 1382836..1383498 (-) 663 WP_024412253.1 helix-hairpin-helix domain-containing protein Machinery gene
  JZY07_RS06920 (JZY07_06920) - 1383565..1384311 (-) 747 WP_024412252.1 1-acyl-sn-glycerol-3-phosphate acyltransferase -
  JZY07_RS06925 (JZY07_06925) - 1384458..1385903 (+) 1446 WP_024400415.1 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L- lysine ligase -
  JZY07_RS06930 (JZY07_06930) - 1386055..1386840 (+) 786 WP_024400414.1 ABC transporter ATP-binding protein -
  JZY07_RS06935 (JZY07_06935) - 1386853..1387782 (+) 930 WP_024400413.1 ABC transporter substrate-binding protein -

Sequence

Protein


Download         Length: 220 a.a.        Molecular weight: 23493.22 Da        Isoelectric Point: 4.1022

>NTDB_id=544869 JZY07_RS06915 WP_024412253.1 1382836..1383498(-) (comEA/celA/cilE) [Streptococcus suis strain SC183]
MDTIKTYIEMLKEYKWQIALPAVAGLLLTTFLIFSQPAKSDQTGLPDLPQTEQTSNSSELIEETSTEVSEEPRQLVVDVK
GAVAKPGLYTLEADARVNDAVEAAGGLTSQADPKSINLAQKLSDEAVVYVASKDENISVVASTTASSAMSQEEKNTSLVN
LNTATEADLQTISGIGAKRATDIIAYREANGGFKSVDDLNNVSGIGDKTMESIRPYVTVD

Nucleotide


Download         Length: 663 bp        

>NTDB_id=544869 JZY07_RS06915 WP_024412253.1 1382836..1383498(-) (comEA/celA/cilE) [Streptococcus suis strain SC183]
ATGGATACGATTAAAACTTATATTGAAATGCTTAAAGAATACAAGTGGCAGATTGCTCTGCCAGCAGTTGCAGGTTTGCT
TCTGACCACATTCTTAATATTCAGCCAACCAGCTAAGTCAGATCAAACAGGACTGCCAGATTTACCACAGACCGAACAAA
CTTCTAATAGCTCTGAGTTGATCGAGGAAACCAGTACAGAAGTAAGTGAGGAGCCCCGCCAGCTGGTCGTTGATGTCAAA
GGAGCGGTAGCAAAGCCAGGACTCTACACATTAGAAGCTGATGCGCGTGTTAATGATGCAGTTGAAGCAGCTGGCGGCTT
GACCAGTCAGGCAGACCCTAAGTCTATCAATCTGGCTCAGAAGCTCAGCGACGAAGCGGTGGTCTATGTGGCCAGTAAGG
ATGAAAATATCTCGGTGGTGGCCAGCACGACTGCCAGCTCTGCTATGTCCCAAGAAGAAAAAAACACCAGTCTGGTCAAT
CTGAACACGGCGACCGAGGCGGACCTGCAGACCATTTCGGGCATCGGTGCCAAGCGAGCGACAGACATTATCGCTTATCG
TGAGGCAAACGGTGGCTTCAAGTCGGTGGACGACCTCAACAATGTATCGGGTATCGGCGACAAGACCATGGAAAGCATCC
GGCCTTATGTCACGGTCGATTAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(155-218)

SLBB domain (SLBB)

(76-130)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/celA/cilE Streptococcus mitis NCTC 12261

46.93

100

0.486
  comEA/celA/cilE Streptococcus pneumoniae Rx1

47.945

99.545

0.477
  comEA/celA/cilE Streptococcus pneumoniae D39

47.945

99.545

0.477
  comEA/celA/cilE Streptococcus pneumoniae R6

47.945

99.545

0.477
  comEA/celA/cilE Streptococcus pneumoniae TIGR4

46.222

100

0.473
  comEA/celA/cilE Streptococcus mitis SK321

44.783

100

0.468
  comEA Streptococcus thermophilus LMD-9

58.025

73.636

0.427
  comEA Lactococcus lactis subsp. cremoris KW2

39.171

98.636

0.386
  comEA Bacillus subtilis subsp. subtilis str. 168

38.571

95.455

0.368