Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   LO005_RS07900 Genome accession   NZ_CP087309
Coordinates   1664187..1664822 (+) Length   211 a.a.
NCBI ID   WP_029424378.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain OC068     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1659187..1669822
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LO005_RS07875 - 1660027..1661040 (+) 1014 WP_001096101.1 aminoglycoside phosphotransferase family protein -
  LO005_RS07880 murU 1661040..1661729 (+) 690 WP_000646457.1 N-acetylmuramate alpha-1-phosphate uridylyltransferase MurU -
  LO005_RS07885 rsmG 1661817..1662449 (+) 633 WP_000553193.1 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG -
  LO005_RS07890 - 1662471..1663253 (+) 783 WP_000057212.1 ParA family protein -
  LO005_RS07895 - 1663250..1664137 (+) 888 WP_000023429.1 ParB/RepB/Spo0J family partition protein -
  LO005_RS07900 exbB 1664187..1664822 (+) 636 WP_029424378.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  LO005_RS07905 - 1664838..1665266 (+) 429 WP_000669683.1 biopolymer transporter ExbD -
  LO005_RS07910 msbA 1665263..1666990 (+) 1728 WP_001070729.1 lipid A export permease/ATP-binding protein MsbA -
  LO005_RS07915 lpxK 1666993..1668003 (+) 1011 WP_000050463.1 tetraacyldisaccharide 4'-kinase -
  LO005_RS07920 kdsB 1668013..1668774 (+) 762 WP_000680696.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  LO005_RS07925 - 1668786..1669766 (+) 981 WP_001075409.1 DNA polymerase III subunit delta' -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 23210.16 Da        Isoelectric Point: 7.3567

>NTDB_id=544869 LO005_RS07900 WP_029424378.1 1664187..1664822(+) (exbB) [Acinetobacter baumannii strain OC068]
MWELVKAGGWLMLPLILCSILTVAISIERFVRLRRSQVLPKVLMNDGSADISVVITNLKQDNNAQSTALGNILKAGFEHQ
EHGEQFARAQMEAMASQEISYLEKNINFLGTLSAIAPLLGLLGTVVGIIESFLVIDFGSAGSPSLMIPGISKALITTAVG
MLIAIPALISYRYFQRVVQDYIAELEQQSTLFHASLFYKRSSVMQEHRRVG

Nucleotide


Download         Length: 636 bp        

>NTDB_id=544869 LO005_RS07900 WP_029424378.1 1664187..1664822(+) (exbB) [Acinetobacter baumannii strain OC068]
ATGTGGGAACTTGTGAAAGCGGGCGGCTGGTTAATGCTGCCTTTAATTTTGTGTTCAATTTTAACCGTCGCAATTAGTAT
TGAGCGTTTTGTACGTTTAAGACGTTCACAAGTTTTACCTAAAGTACTAATGAATGATGGCAGTGCAGATATTTCTGTTG
TCATAACAAATTTGAAACAGGATAATAATGCGCAAAGCACGGCATTGGGCAATATTCTAAAAGCTGGTTTTGAGCATCAG
GAACATGGCGAACAATTTGCTCGAGCACAAATGGAAGCTATGGCTTCTCAAGAAATTTCTTATTTAGAAAAAAATATTAA
CTTCTTAGGGACTTTAAGTGCTATAGCGCCTCTACTAGGGCTGCTTGGAACAGTTGTGGGAATTATTGAGTCTTTTTTGG
TTATTGATTTTGGTTCGGCAGGTAGTCCTAGTTTAATGATTCCCGGTATTTCCAAGGCTTTGATCACAACAGCAGTTGGT
ATGCTCATTGCAATTCCTGCACTTATTTCCTATCGATATTTTCAAAGAGTAGTGCAAGATTATATTGCTGAGTTAGAGCA
ACAATCTACGCTATTTCATGCCTCATTGTTTTACAAACGTTCTTCAGTCATGCAAGAACATCGCCGCGTTGGTTGA

Domains

Predicted by InterProScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(67-186)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

43.979

90.521

0.398