Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   BN424_RS09855 Genome accession   NC_019425
Coordinates   2120255..2121514 (-) Length   419 a.a.
NCBI ID   WP_015076691.1    Uniprot ID   K8EI77
Organism   Carnobacterium maltaromaticum LMA28     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 2115255..2126514
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BN424_RS09835 (BN424_2091) - 2115461..2115850 (-) 390 WP_010054244.1 RicAFT regulatory complex protein RicA family protein -
  BN424_RS09840 (BN424_2092) - 2115847..2116656 (-) 810 WP_010054242.1 TIGR00282 family metallophosphoesterase -
  BN424_RS09845 (BN424_2093) rny 2116840..2118405 (-) 1566 WP_010054241.1 ribonuclease Y -
  BN424_RS09850 (BN424_2094) recA 2118795..2119949 (-) 1155 WP_015076688.1 recombinase RecA Machinery gene
  BN424_RS09855 (BN424_2097) cinA 2120255..2121514 (-) 1260 WP_015076691.1 competence/damage-inducible protein A Machinery gene
  BN424_RS09860 (BN424_2098) - 2121568..2122962 (-) 1395 WP_015076692.1 metallophosphoesterase -
  BN424_RS09865 (BN424_2099) pgsA 2123074..2123652 (-) 579 WP_010054237.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  BN424_RS09870 (BN424_2100) - 2123790..2125865 (-) 2076 WP_015076693.1 Na+/H+ antiporter -

Sequence

Protein


Download         Length: 419 a.a.        Molecular weight: 45250.00 Da        Isoelectric Point: 5.2090

>NTDB_id=54417 BN424_RS09855 WP_015076691.1 2120255..2121514(-) (cinA) [Carnobacterium maltaromaticum LMA28]
MKAEIIAVGTELLLGQIVNSNAAFLSQELAVLGINVYHHVVVGDNPERLDQVLTEAEKRSDLIILSGGLGPTKDDMTKQT
IAAHLNRSLITDAATLKTIVEYHEKTKRPMPENNKLQAVVIEGSTVLKNPTGLAAGMFIKENGKMYVLLPGPPSELKPMF
LQEARPLLLANSDKPELLVSRVLRFFGIGESKLVTILDDLIENQKNPTIAPYAGVHEVTLRLTANGGSEKACNELLDRLE
ATIQERVGTYFYGYGDETTLVEVVVDLLKEKKLKITAAESLTGGAFQSLLASVSGVSAIFDGGVVTYSNESKTKVLGVSS
DTIKQYGVVSEACSIEMAEGVKQLYGTDIAISFTGVAGPETLENQPAGTVWIGLAVTGQKTIAKCFHFGRNRNGNREQAA
LSGLEMVRRILKNIPLDEE

Nucleotide


Download         Length: 1260 bp        

>NTDB_id=54417 BN424_RS09855 WP_015076691.1 2120255..2121514(-) (cinA) [Carnobacterium maltaromaticum LMA28]
ATGAAAGCAGAAATTATCGCAGTTGGAACGGAATTATTATTAGGACAAATCGTTAATAGCAATGCGGCTTTTCTTTCACA
AGAGTTGGCTGTATTAGGAATTAATGTGTATCATCATGTTGTGGTTGGAGATAATCCTGAGCGGCTAGATCAAGTATTAA
CAGAAGCTGAAAAACGTAGTGATTTAATTATTCTTTCAGGAGGCTTAGGGCCCACTAAAGATGATATGACGAAACAAACA
ATCGCAGCGCACTTAAATCGATCACTTATAACAGATGCAGCAACACTAAAAACAATTGTTGAATATCATGAAAAAACGAA
ACGACCGATGCCTGAAAATAATAAATTGCAAGCTGTTGTAATAGAAGGTTCAACAGTTTTAAAAAATCCAACAGGTTTAG
CAGCAGGAATGTTTATAAAAGAGAATGGAAAAATGTATGTATTGCTACCAGGACCACCTAGCGAATTAAAGCCAATGTTT
TTACAAGAAGCAAGACCTTTACTATTAGCAAATAGTGATAAACCTGAACTGCTTGTTTCAAGAGTATTGCGCTTTTTTGG
TATAGGTGAATCGAAATTAGTTACGATTTTAGATGACTTAATTGAAAATCAAAAAAACCCAACGATTGCTCCCTATGCTG
GAGTTCATGAAGTAACTTTGCGTTTAACAGCAAATGGAGGCTCTGAGAAAGCCTGTAATGAACTTCTAGATAGATTGGAA
GCAACGATTCAAGAAAGGGTAGGAACGTATTTTTATGGCTATGGAGACGAAACAACATTAGTTGAAGTGGTTGTTGATTT
ATTAAAAGAAAAAAAATTGAAGATAACAGCTGCAGAAAGTTTAACAGGAGGAGCTTTTCAAAGTTTACTAGCTAGCGTTT
CAGGAGTTTCTGCTATCTTTGATGGAGGCGTAGTCACTTATAGCAATGAGAGTAAAACAAAGGTATTAGGCGTATCTTCC
GACACAATTAAGCAGTATGGAGTTGTTAGCGAGGCATGCAGTATTGAAATGGCAGAAGGTGTTAAACAGTTATACGGAAC
AGATATAGCTATTTCTTTTACAGGAGTGGCAGGTCCAGAGACATTAGAAAATCAGCCAGCAGGAACAGTTTGGATTGGAT
TAGCGGTAACAGGTCAAAAAACAATTGCGAAATGTTTTCATTTTGGTAGGAATCGAAATGGCAATCGCGAACAAGCCGCA
TTAAGTGGATTAGAAATGGTTCGTCGCATATTAAAAAATATTCCGCTAGATGAAGAGTGA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-168)

Competence-damaged protein (CinA)

(258-410)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB K8EI77

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

53.155

98.329

0.523
  cinA Streptococcus mutans UA159

51.932

98.807

0.513
  cinA Streptococcus mitis SK321

49.642

100

0.496
  cinA Streptococcus mitis NCTC 12261

49.165

100

0.492
  cinA Streptococcus pneumoniae TIGR4

48.687

100

0.487
  cinA Streptococcus pneumoniae Rx1

48.449

100

0.484
  cinA Streptococcus pneumoniae R6

48.449

100

0.484
  cinA Streptococcus pneumoniae D39

48.21

100

0.482
  cinA Streptococcus suis isolate S10

41.787

98.807

0.413

Multiple sequence alignment