Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   SDSE_RS15480 Genome accession   NC_019042
Coordinates   982434..983276 (-) Length   280 a.a.
NCBI ID   WP_015057583.1    Uniprot ID   -
Organism   Streptococcus dysgalactiae subsp. equisimilis AC-2713     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 977434..988276
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SDSE_RS15465 (S_dysgal_equisimilis_AC2713_1035) - 977992..979050 (-) 1059 Protein_923 PTS sugar transporter subunit IIC -
  SDSE_RS21685 - 979242..980125 (+) 884 Protein_924 LysR family transcriptional regulator -
  SDSE_RS15475 (S_dysgal_equisimilis_AC2713_1038) topA 980201..982333 (-) 2133 WP_012766956.1 type I DNA topoisomerase -
  SDSE_RS15480 (S_dysgal_equisimilis_AC2713_1039) dprA 982434..983276 (-) 843 WP_015057583.1 DNA-processing protein DprA Machinery gene
  SDSE_RS15485 (S_dysgal_equisimilis_AC2713_1040) - 983383..984153 (-) 771 WP_003056385.1 ribonuclease HII -
  SDSE_RS15490 (S_dysgal_equisimilis_AC2713_1041) ylqF 984143..984991 (-) 849 WP_003062503.1 ribosome biogenesis GTPase YlqF -
  SDSE_RS15495 (S_dysgal_equisimilis_AC2713_1042) - 985713..985943 (-) 231 WP_003062326.1 hypothetical protein -
  SDSE_RS15500 (S_dysgal_equisimilis_AC2713_1044) - 986162..987049 (-) 888 WP_015057584.1 Rgg/GadR/MutR family transcriptional regulator -
  SDSE_RS15505 (S_dysgal_equisimilis_AC2713_1045) - 987389..987829 (+) 441 WP_003050852.1 DUF1836 domain-containing protein -

Sequence

Protein


Download         Length: 280 a.a.        Molecular weight: 31292.26 Da        Isoelectric Point: 8.8219

>NTDB_id=54307 SDSE_RS15480 WP_015057583.1 982434..983276(-) (dprA) [Streptococcus dysgalactiae subsp. equisimilis AC-2713]
MNHFELYKLKKAGLTNKNILNILDYQKQQEKSLSLRDMAVVSGCKHPSHFIETYKQLDIQKLKMEFKQFPSISILDKHYP
MALKEIYNPPVLLFFQGNLDLLDQPKLAIVGSRRSSDTGVKSVRKILKELGNRFVIVSGLARGIDTSAHLACLKNGGQTI
AVIGTGLDRFYPKENQELQTFLGRKHLILTEYGPGEEPLSYHFPERNRIIAGLSRGILVVEAKNRSGSLITCQIGIEEGR
DIFAVPGNILDGESEGCLQLIKEGATCVTSGMDILSEYQK

Nucleotide


Download         Length: 843 bp        

>NTDB_id=54307 SDSE_RS15480 WP_015057583.1 982434..983276(-) (dprA) [Streptococcus dysgalactiae subsp. equisimilis AC-2713]
GTGAATCATTTTGAACTTTATAAGCTAAAGAAGGCTGGACTGACTAATAAAAATATTCTCAATATTCTTGACTACCAAAA
GCAACAGGAAAAATCGTTGTCGCTTCGAGACATGGCCGTTGTTTCCGGTTGTAAGCACCCGTCTCACTTTATAGAAACCT
ATAAGCAGTTAGATATCCAAAAGTTAAAAATGGAATTTAAACAATTCCCTAGTATTTCTATCCTAGATAAACATTACCCA
ATGGCTTTGAAAGAAATATATAATCCGCCCGTCCTCTTGTTTTTTCAAGGCAATTTAGACCTTCTTGATCAACCTAAATT
AGCCATTGTGGGCTCAAGGCGCTCAAGCGATACCGGAGTAAAGTCTGTCCGTAAAATTCTTAAAGAACTCGGGAACCGTT
TTGTGATTGTCAGCGGACTTGCTCGAGGTATTGACACTAGTGCACATTTAGCCTGTCTTAAAAACGGAGGACAAACCATT
GCGGTGATAGGAACAGGATTAGACCGTTTTTATCCCAAAGAAAATCAAGAATTACAAACATTCTTAGGAAGGAAACACCT
TATCTTGACGGAATACGGTCCAGGAGAAGAACCACTATCGTATCACTTTCCGGAACGCAATCGTATTATTGCAGGGCTTA
GTCGAGGTATTCTCGTCGTTGAAGCAAAAAATCGCTCAGGTTCCTTGATTACTTGTCAAATTGGGATAGAAGAGGGTCGA
GATATTTTTGCTGTTCCAGGAAACATTTTGGACGGCGAATCTGAAGGTTGTTTACAGCTTATAAAAGAGGGAGCAACCTG
CGTCACATCAGGGATGGACATCCTTTCTGAATATCAAAAATAA

Domains

Predicted by InterproScan.

DNA processing protein A sterile alpha motif domain (SAM_DprA)

(1-62)

DNA recombination-mediator protein A (DNA_processg_A)

(68-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Streptococcus mutans UA159

66.906

99.286

0.664
  dprA/cilB/dalA Streptococcus mitis SK321

60.573

99.643

0.604
  dprA/cilB/dalA Streptococcus pneumoniae Rx1

60.573

99.643

0.604
  dprA/cilB/dalA Streptococcus pneumoniae D39

60.573

99.643

0.604
  dprA/cilB/dalA Streptococcus pneumoniae R6

60.573

99.643

0.604
  dprA/cilB/dalA Streptococcus pneumoniae TIGR4

60.573

99.643

0.604
  dprA/cilB/dalA Streptococcus mitis NCTC 12261

60.215

99.643

0.6
  dprA Lactococcus lactis subsp. cremoris KW2

57.194

99.286

0.568
  dprA Legionella pneumophila strain ERS1305867

43.75

85.714

0.375
  dprA Haemophilus influenzae Rd KW20

38.577

95.357

0.368
  dprA Acinetobacter baumannii D1279779

38.577

95.357

0.368

Multiple sequence alignment