Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   JY500_RS05890 Genome accession   NZ_CP071060
Coordinates   1270966..1272198 (-) Length   410 a.a.
NCBI ID   WP_206255476.1    Uniprot ID   -
Organism   Niveibacterium microcysteis strain HC41     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1265966..1277198
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JY500_RS05870 (JY500_05870) aspS 1266945..1268729 (-) 1785 WP_206255472.1 aspartate--tRNA ligase -
  JY500_RS05875 (JY500_05875) - 1268941..1269558 (-) 618 WP_172204038.1 DUF502 domain-containing protein -
  JY500_RS05880 (JY500_05880) - 1269558..1269827 (-) 270 WP_206255473.1 FmdB family zinc ribbon protein -
  JY500_RS05885 (JY500_05885) pilD 1269983..1270834 (-) 852 WP_206255475.1 A24 family peptidase Machinery gene
  JY500_RS05890 (JY500_05890) pilC 1270966..1272198 (-) 1233 WP_206255476.1 type II secretion system F family protein Machinery gene
  JY500_RS05895 (JY500_05895) pilB 1272214..1273935 (-) 1722 WP_206255478.1 type IV-A pilus assembly ATPase PilB Machinery gene
  JY500_RS05900 (JY500_05900) ccsA 1274129..1274938 (-) 810 WP_206255479.1 cytochrome c biogenesis protein CcsA -
  JY500_RS05905 (JY500_05905) ffh 1274996..1276354 (+) 1359 WP_206255480.1 signal recognition particle protein -

Sequence

Protein


Download         Length: 410 a.a.        Molecular weight: 44310.04 Da        Isoelectric Point: 10.2450

>NTDB_id=542585 JY500_RS05890 WP_206255476.1 1270966..1272198(-) (pilC) [Niveibacterium microcysteis strain HC41]
MATAAKTVRKPKGSEEGVFTWEGKDKNGRVVRGETRAGSASIVQANLRRQGISNAKVKKRSFSKGGKVTDKDIALFTRQL
ATMLRSGVPLLQTFDIAIKGASNPALARLLNEIRADIETGAGLANAFRKHPVYFDSLYANLVAAGEQSGALEALLDRLAI
YKEKILAIKSKIKGALFYPISVVAVAFGVVAVMMLFVIPQFKSVFTSFGAELPAPTLMVMAMSDFFIAYWWLVFGTIAGV
VIGLSFAYKRSPNMQFTMDRLILHIPVIGEIIRKATIARWTRTLSTMFAAGVPLVEALDSVGGAAGNRVYQLATKQVQNE
VSTGTSLTISMQNVNVFPTMVIQMVSIGEESGQLDGMLGKVADFFEREVDDAVDALSQLLEPLIIVFLGTVVGGLVVAMY
LPIFKLGTVI

Nucleotide


Download         Length: 1233 bp        

>NTDB_id=542585 JY500_RS05890 WP_206255476.1 1270966..1272198(-) (pilC) [Niveibacterium microcysteis strain HC41]
ATGGCGACAGCAGCGAAAACAGTTCGCAAGCCAAAGGGCTCCGAAGAGGGCGTATTCACTTGGGAAGGCAAAGACAAGAA
CGGTCGAGTGGTTCGGGGGGAGACTCGCGCAGGCAGCGCGTCGATCGTCCAGGCCAACCTTCGACGCCAAGGGATCAGCA
ACGCCAAGGTGAAGAAGCGCTCCTTTTCCAAAGGTGGAAAAGTCACGGACAAAGACATTGCGCTGTTTACGCGTCAGCTT
GCAACGATGCTCAGGTCGGGAGTGCCGCTACTACAGACATTTGACATTGCTATCAAGGGGGCTTCTAACCCAGCCCTCGC
TCGCCTGCTGAACGAGATTCGGGCGGACATTGAAACCGGTGCGGGTCTGGCGAACGCCTTCAGGAAGCACCCCGTCTACT
TTGACTCTTTGTATGCAAACCTTGTTGCAGCAGGGGAACAGTCAGGCGCGCTAGAAGCGCTACTTGATCGACTGGCAATC
TACAAAGAGAAAATTCTCGCCATTAAGAGCAAAATTAAAGGCGCTCTGTTCTACCCAATATCGGTTGTGGCGGTGGCGTT
CGGCGTCGTTGCGGTCATGATGCTATTCGTCATTCCACAATTCAAATCGGTGTTCACCAGTTTCGGCGCAGAACTTCCGG
CTCCAACACTAATGGTCATGGCGATGTCCGATTTCTTCATCGCATATTGGTGGCTAGTATTTGGAACAATTGCTGGCGTT
GTCATCGGTTTGTCTTTCGCATACAAGCGATCGCCGAATATGCAGTTCACGATGGACCGCCTGATACTTCATATCCCGGT
AATCGGCGAGATCATTCGAAAGGCAACCATCGCGCGATGGACTCGCACATTGTCTACGATGTTCGCAGCAGGCGTTCCGC
TCGTCGAGGCACTTGACTCGGTCGGAGGGGCCGCGGGTAACCGCGTATATCAGCTCGCGACTAAGCAGGTGCAAAACGAA
GTTAGCACCGGCACCAGCCTAACCATTTCGATGCAGAACGTGAACGTATTCCCGACAATGGTCATCCAGATGGTTTCCAT
TGGAGAGGAGTCCGGCCAGCTGGATGGTATGCTCGGAAAAGTTGCTGACTTTTTCGAACGAGAGGTGGACGACGCAGTCG
ACGCGCTATCCCAACTCCTTGAGCCCCTCATTATTGTTTTCCTGGGCACCGTAGTCGGCGGCTTGGTTGTGGCAATGTAT
CTGCCAATCTTCAAGCTTGGCACTGTAATCTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(76-199)

Type II secretion system (T2SS), protein F (T2SSF)

(280-402)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Legionella pneumophila strain ERS1305867

55.025

97.073

0.534
  pilC Pseudomonas stutzeri DSM 10701

51.493

98.049

0.505
  pilG Neisseria meningitidis 44/76-A

50

98.537

0.493
  pilG Neisseria gonorrhoeae MS11

49.874

96.829

0.483
  pilC Acinetobacter baylyi ADP1

47.99

97.073

0.466
  pilC Acinetobacter baumannii D1279779

47.355

96.829

0.459
  pilC Vibrio cholerae strain A1552

44.444

96.585

0.429
  pilC Vibrio campbellii strain DS40M4

41.975

98.78

0.415
  pilC Thermus thermophilus HB27

37.74

100

0.383