Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   JYG38_RS01285 Genome accession   NZ_CP070981
Coordinates   293910..295235 (+) Length   441 a.a.
NCBI ID   WP_094065157.1    Uniprot ID   -
Organism   Pseudomonas rhodesiae strain DLA23     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 288910..300235
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JYG38_RS01265 (JYG38_01265) - 288972..291440 (-) 2469 WP_213632893.1 penicillin-binding protein 1A -
  JYG38_RS01270 (JYG38_01270) pilM 291658..292311 (+) 654 WP_236216967.1 type IV pilus assembly protein PilM -
  JYG38_RS01275 (JYG38_01275) - 292308..292862 (+) 555 WP_249746347.1 PilN domain-containing protein -
  JYG38_RS01280 (JYG38_01280) - 292859..293839 (+) 981 WP_213632896.1 pilus assembly protein PilP -
  JYG38_RS01285 (JYG38_01285) pilQ 293910..295235 (+) 1326 WP_094065157.1 type IV pilus secretin PilQ family protein Machinery gene
  JYG38_RS01290 (JYG38_01290) aroK 295240..295758 (+) 519 WP_003187914.1 shikimate kinase AroK -
  JYG38_RS01295 (JYG38_01295) aroB 295884..296984 (+) 1101 WP_034095512.1 3-dehydroquinate synthase -
  JYG38_RS01300 (JYG38_01300) - 296995..298554 (+) 1560 WP_034136585.1 AAA family ATPase -

Sequence

Protein


Download         Length: 441 a.a.        Molecular weight: 47747.76 Da        Isoelectric Point: 4.8745

>NTDB_id=541816 JYG38_RS01285 WP_094065157.1 293910..295235(+) (pilQ) [Pseudomonas rhodesiae strain DLA23]
MAAAVPNRVDLIQLPPPGRAVVSASNGEPLSLNFQNIEVRAVLQQIADVAGLNLVAGDDVQGTITLRLKGVPWDQALDLV
LQAKGLDKRIKAGVLLVAPAEELAARELLTLESRKQMADLAPLRRELLQVNYAKAADLAKLFQSVTGLEGATDERGSVAV
DDRTNNIIAYQTGERLDELRRIVAQLDIPVRQVMIEARIVEANVDYDKSLGARWGGRLARGNWQAGGMPKPLPEGAQPPE
NPPSSPFVDLGAVTASSGLGVAYITDNLLLDLELTAMEKTGNGEIVSQPKVVTSDKETARILKGTEIPYQESSSSGATSV
SFKEASLSLEVTPQITPDDRVIMEVKVTKDEPDYLNRLNDVPPIKKNEVNAKVLVKDGETIVIGGVFSNTQSKVVDKVPF
LGDVPYLGRLFRRDMLAEKKSELLVFLTPRIMNNQAIAVSR

Nucleotide


Download         Length: 1326 bp        

>NTDB_id=541816 JYG38_RS01285 WP_094065157.1 293910..295235(+) (pilQ) [Pseudomonas rhodesiae strain DLA23]
ATGGCTGCCGCTGTGCCCAATCGTGTGGACCTCATCCAATTGCCACCCCCTGGCAGGGCGGTGGTGAGTGCCTCTAATGG
CGAGCCACTTAGCCTCAATTTCCAGAACATCGAAGTACGTGCCGTGCTGCAGCAGATCGCTGATGTCGCAGGCCTGAATC
TGGTCGCAGGCGACGACGTGCAGGGCACGATCACACTGCGCCTCAAAGGAGTGCCGTGGGATCAGGCCCTCGACCTGGTG
CTGCAAGCCAAGGGGTTGGATAAGCGGATCAAGGCCGGGGTATTGCTGGTGGCGCCCGCAGAGGAGTTGGCGGCCCGCGA
ACTGCTGACGCTGGAATCACGCAAACAAATGGCCGACTTGGCGCCGTTGCGTCGCGAGCTGTTGCAGGTCAACTACGCCA
AGGCTGCGGACCTGGCCAAGCTGTTCCAATCAGTGACCGGCCTGGAAGGTGCTACCGACGAGCGCGGTTCGGTGGCGGTG
GACGATCGCACCAATAACATCATCGCTTACCAGACCGGCGAACGCCTCGACGAGCTGCGAAGGATCGTGGCGCAGCTGGA
TATTCCGGTGCGCCAGGTCATGATCGAAGCGCGAATCGTGGAGGCCAACGTCGATTACGACAAAAGCCTGGGCGCGCGCT
GGGGTGGGCGGCTTGCGCGCGGCAACTGGCAGGCCGGCGGTATGCCTAAGCCGCTGCCGGAGGGCGCGCAACCCCCGGAG
AACCCACCCAGCTCGCCGTTTGTCGATCTGGGCGCGGTGACGGCGTCGTCCGGTCTGGGTGTGGCCTATATCACCGACAA
TCTGCTGCTGGACCTGGAACTGACGGCGATGGAGAAGACCGGCAATGGTGAAATCGTCTCGCAGCCCAAAGTGGTGACCT
CCGACAAGGAGACCGCGCGCATCCTCAAGGGCACCGAGATTCCGTATCAGGAGTCCAGCTCCAGCGGCGCGACATCGGTG
TCGTTCAAGGAGGCCTCGTTGTCGCTGGAAGTCACCCCGCAGATCACCCCCGACGACCGGGTGATCATGGAGGTGAAAGT
CACCAAGGATGAGCCCGACTATCTCAACCGGCTCAATGACGTACCGCCGATCAAGAAAAACGAGGTCAATGCCAAGGTCC
TCGTCAAGGATGGCGAGACCATCGTGATCGGTGGAGTTTTCTCCAATACCCAAAGCAAAGTGGTAGATAAAGTGCCATTT
TTGGGCGATGTGCCGTATCTTGGCCGCCTTTTCCGGCGCGATATGCTGGCGGAGAAAAAATCCGAGCTGCTGGTATTCCT
GACTCCGCGTATTATGAATAACCAGGCGATTGCTGTGAGTCGTTGA

Domains

Predicted by InterproScan.

Bacterial type II and III secretion system protein (Secretin)

(276-432)

Bacterial type II/III secretion system short domain (Secretin_N)

(127-192)

Secretin and TonB N terminus short domain (STN)

(53-99)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Pseudomonas aeruginosa PAK

71.396

99.093

0.707
  comQ Acinetobacter baylyi ADP1

43.08

100

0.438
  pilQ Vibrio campbellii strain DS40M4

44.208

95.918

0.424
  pilQ Acinetobacter baumannii strain A118

40.13

100

0.419
  pilQ Acinetobacter baumannii D1279779

40.13

100

0.419
  pilQ Legionella pneumophila strain ERS1305867

44.258

94.785

0.419
  pilQ Legionella pneumophila strain Lp02

44.258

94.785

0.419
  pilQ Vibrio cholerae O1 biovar El Tor strain E7946

44.019

94.785

0.417
  pilQ Vibrio cholerae strain A1552

44.019

94.785

0.417