Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   JYG35_RS02975 Genome accession   NZ_CP070980
Coordinates   685794..687119 (+) Length   441 a.a.
NCBI ID   WP_034136583.1    Uniprot ID   -
Organism   Pseudomonas rhodesiae strain AAMF24     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 680794..692119
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JYG35_RS02955 (JYG35_02955) - 680856..683324 (-) 2469 WP_034095508.1 penicillin-binding protein 1A -
  JYG35_RS02960 (JYG35_02960) pilM 683542..684195 (+) 654 WP_249745141.1 type IV pilus assembly protein PilM -
  JYG35_RS02965 (JYG35_02965) - 684192..684746 (+) 555 WP_249745142.1 PilN domain-containing protein -
  JYG35_RS02970 (JYG35_02970) - 684743..685723 (+) 981 WP_213548576.1 pilus assembly protein PilP -
  JYG35_RS02975 (JYG35_02975) pilQ 685794..687119 (+) 1326 WP_034136583.1 type IV pilus secretin PilQ family protein Machinery gene
  JYG35_RS02980 (JYG35_02980) aroK 687124..687642 (+) 519 WP_003187914.1 shikimate kinase AroK -
  JYG35_RS02985 (JYG35_02985) aroB 687768..688868 (+) 1101 WP_213548578.1 3-dehydroquinate synthase -
  JYG35_RS02990 (JYG35_02990) - 688879..690438 (+) 1560 WP_034136585.1 AAA family ATPase -

Sequence

Protein


Download         Length: 441 a.a.        Molecular weight: 47835.87 Da        Isoelectric Point: 4.8745

>NTDB_id=541794 JYG35_RS02975 WP_034136583.1 685794..687119(+) (pilQ) [Pseudomonas rhodesiae strain AAMF24]
MAAAVPNRVDLIQLPPPGRAVVSAFSGEPLNLNFQNIEVRAVLQQIADVAGLNLVAGDDVQGTITLRLKGVPWDQALDLV
LQAKGLDKRIKAGVLLVAPAEELAARELLTLESRKQMADLAPLRRELLQVNYAKAADLAKLFQSVTGLEGATDERGSVAV
DDRTNNIIAYQTGERLDELRRIVAQLDIPVRQVMIEARIVEANVDYDKSLGARWGGRLARGNWQAGGMPKPLPEGAQPPE
NPPSSPFVDLGAVTASSGLGVAYITDNLLLDLELTAMEKTGNGEIVSQPKVVTSDKETARILKGTEIPYQESSSSGATSV
SFKEASLSLEVTPQITPDDRVIMEVKVTKDEPDYLNRLNDVPPIKKNEVNAKVLVRDGETIVIGGVFSNTQSKVVDKVPF
LGDVPYLGRLFRRDMLAEKKSELLVFLTPRIMNNQAIAVSR

Nucleotide


Download         Length: 1326 bp        

>NTDB_id=541794 JYG35_RS02975 WP_034136583.1 685794..687119(+) (pilQ) [Pseudomonas rhodesiae strain AAMF24]
ATGGCTGCCGCTGTGCCCAATCGTGTGGACCTCATCCAATTGCCGCCCCCTGGCAGGGCGGTGGTGAGTGCCTTTAGTGG
CGAACCGCTCAACCTCAATTTCCAGAACATCGAAGTACGTGCCGTGCTGCAGCAGATCGCCGATGTTGCAGGCCTGAACC
TGGTCGCCGGCGACGACGTGCAGGGCACGATCACACTGCGCCTCAAAGGCGTGCCGTGGGATCAGGCCCTCGACCTGGTG
CTGCAAGCGAAGGGGTTGGACAAGCGGATCAAGGCCGGGGTATTGCTGGTGGCGCCCGCTGAGGAGTTGGCGGCCCGCGA
ACTGCTGACGCTGGAATCACGCAAACAAATGGCCGACTTGGCGCCGTTGCGTCGCGAGCTGTTGCAGGTCAACTACGCCA
AGGCGGCGGACCTGGCCAAGCTGTTCCAATCGGTGACCGGCCTGGAAGGTGCTACCGACGAGCGCGGTTCGGTGGCGGTG
GACGATCGCACCAATAACATCATCGCTTACCAGACCGGCGAACGCCTCGACGAGCTGCGACGGATCGTGGCGCAGCTGGA
TATTCCGGTGCGCCAGGTCATGATCGAAGCGCGAATCGTGGAGGCCAACGTCGATTACGACAAAAGCCTGGGCGCGCGCT
GGGGTGGGCGGCTTGCGCGCGGCAACTGGCAGGCCGGCGGTATGCCTAAGCCGCTGCCGGAGGGCGCGCAACCCCCGGAG
AACCCACCCAGCTCGCCGTTTGTCGATCTGGGCGCGGTGACGGCGTCGTCCGGTCTGGGTGTGGCCTATATCACCGACAA
TCTGCTGCTGGACCTGGAACTGACGGCGATGGAGAAGACCGGCAATGGTGAAATCGTCTCGCAGCCCAAAGTGGTGACCT
CCGACAAGGAGACCGCACGCATCCTCAAGGGCACCGAGATTCCGTATCAGGAGTCCAGCTCCAGCGGCGCGACATCGGTG
TCGTTCAAGGAGGCCTCGTTGTCGCTGGAAGTCACCCCGCAGATCACCCCCGACGACCGGGTGATCATGGAGGTGAAAGT
CACCAAGGATGAGCCCGACTATCTCAACCGGCTCAATGACGTACCGCCGATCAAGAAAAACGAGGTCAATGCCAAGGTCC
TCGTCAGGGATGGCGAGACCATCGTGATCGGTGGAGTTTTCTCCAATACCCAAAGCAAAGTGGTAGATAAAGTGCCATTT
TTGGGCGATGTGCCGTATCTTGGCCGCCTTTTCCGGCGCGATATGCTGGCGGAGAAAAAATCCGAGCTGCTGGTATTCCT
GACTCCGCGTATTATGAATAACCAGGCGATTGCTGTGAGTCGTTGA

Domains

Predicted by InterproScan.

Bacterial type II/III secretion system short domain (Secretin_N)

(127-192)

Bacterial type II and III secretion system protein (Secretin)

(276-432)

Secretin and TonB N terminus short domain (STN)

(53-99)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Pseudomonas aeruginosa PAK

71.167

99.093

0.705
  comQ Acinetobacter baylyi ADP1

42.667

100

0.435
  pilQ Acinetobacter baumannii strain A118

38.821

100

0.433
  pilQ Acinetobacter baumannii D1279779

38.821

100

0.433
  pilQ Vibrio campbellii strain DS40M4

43.972

95.918

0.422
  pilQ Legionella pneumophila strain Lp02

44.048

95.238

0.42
  pilQ Legionella pneumophila strain ERS1305867

44.048

95.238

0.42
  pilQ Vibrio cholerae strain A1552

43.78

94.785

0.415
  pilQ Vibrio cholerae O1 biovar El Tor strain E7946

43.78

94.785

0.415