Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   JYG31_RS09125 Genome accession   NZ_CP070976
Coordinates   1777282..1778532 (+) Length   416 a.a.
NCBI ID   WP_198097431.1    Uniprot ID   -
Organism   Bacillus halotolerans strain MBH1     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 1772282..1783532
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JYG31_RS09095 (JYG31_09095) - 1772375..1773661 (+) 1287 WP_101861233.1 pitrilysin family protein -
  JYG31_RS09100 (JYG31_09100) - 1773713..1774441 (+) 729 WP_024121450.1 SDR family oxidoreductase -
  JYG31_RS09105 (JYG31_09105) - 1774521..1774778 (+) 258 WP_024121451.1 DUF3243 domain-containing protein -
  JYG31_RS09110 (JYG31_09110) - 1774908..1775699 (+) 792 WP_024121452.1 YmfK family protein -
  JYG31_RS09115 (JYG31_09115) - 1775766..1776632 (+) 867 WP_229043071.1 RodZ family helix-turn-helix domain-containing protein -
  JYG31_RS09120 (JYG31_09120) pgsA 1776682..1777263 (+) 582 WP_024121454.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  JYG31_RS09125 (JYG31_09125) cinA 1777282..1778532 (+) 1251 WP_198097431.1 competence/damage-inducible protein A Machinery gene
  JYG31_RS09130 (JYG31_09130) recA 1778705..1779751 (+) 1047 WP_010334307.1 recombinase RecA Machinery gene
  JYG31_RS09135 (JYG31_09135) - 1779925..1781103 (+) 1179 WP_024121456.1 serine hydrolase domain-containing protein -
  JYG31_RS09140 (JYG31_09140) rny 1781390..1782952 (+) 1563 WP_010334309.1 ribonuclease Y -

Sequence

Protein


Download         Length: 416 a.a.        Molecular weight: 45501.86 Da        Isoelectric Point: 5.2490

>NTDB_id=541730 JYG31_RS09125 WP_198097431.1 1777282..1778532(+) (cinA) [Bacillus halotolerans strain MBH1]
MEFPKKAEIIAVGSELLLGQIANTNAQFISKQLAEIGVNVFYHTAVGDNPERLKQVIRIAEERSDFIIFSGGLGPTKDDL
TKETIANVLGRPLVLNDEAFQSIEDYFKRTKRTMSPNNRKQALVIEGSDVLANHFGMAPGMLTKHDSRFYMLLPGPPSEL
RPMFENEAKPLLLKKMGSNEKIVSTVLRFFGIGESQLEADLEDIIDAQTNPTIAPLAADGEVTLRLTAKHADEKETERLL
KETEAVILERVGEFFYGYDDTSLVKELSKACKEKGITLSAAESFTGGLFSEWLTDLSGASALFSGGVVCYSNEVKQNVLG
VKKETLDRFGAVSEECASELAKGVQQLTGSDIGISFTGVAGPDTQEGHAPGHVFIGIFANGKEEVHEFHFAGSRTGIRKR
AAKYGCHLILKLLEQK

Nucleotide


Download         Length: 1251 bp        

>NTDB_id=541730 JYG31_RS09125 WP_198097431.1 1777282..1778532(+) (cinA) [Bacillus halotolerans strain MBH1]
ATGGAATTTCCAAAAAAAGCAGAGATTATTGCAGTCGGTTCAGAGCTCTTACTCGGTCAGATTGCTAATACAAATGCTCA
ATTTATCAGCAAACAGCTGGCAGAAATCGGAGTAAACGTATTTTACCATACAGCAGTCGGTGATAATCCGGAGCGGCTGA
AGCAGGTCATCCGCATTGCTGAAGAGCGCTCTGATTTTATTATTTTTTCAGGAGGGCTCGGGCCGACAAAAGATGATTTA
ACAAAAGAAACAATAGCAAATGTGCTGGGACGTCCGCTCGTTTTAAATGATGAGGCGTTTCAATCCATTGAGGATTATTT
CAAACGAACAAAACGCACGATGTCACCTAATAACCGAAAACAGGCGCTTGTCATCGAAGGATCTGACGTACTGGCGAATC
ACTTTGGAATGGCGCCGGGAATGCTTACAAAGCATGATTCGCGCTTTTATATGCTTCTTCCCGGGCCGCCAAGCGAATTG
CGTCCGATGTTTGAAAATGAGGCAAAACCGCTTCTTCTTAAAAAGATGGGCTCCAATGAAAAAATTGTATCAACTGTTCT
TCGCTTTTTCGGTATCGGCGAATCTCAGCTTGAAGCTGATTTAGAAGATATCATTGATGCACAGACGAACCCGACGATCG
CTCCGTTGGCAGCGGACGGAGAGGTGACGCTTCGCTTGACAGCAAAACATGCCGATGAAAAAGAAACAGAGCGTTTGTTA
AAAGAAACAGAAGCCGTTATTTTAGAACGTGTCGGTGAATTTTTCTATGGCTACGACGATACATCGCTTGTGAAAGAGCT
ATCTAAAGCATGCAAGGAAAAAGGCATCACGCTTTCTGCCGCAGAAAGCTTTACCGGCGGGCTGTTTTCCGAATGGCTGA
CAGACCTTAGCGGCGCTTCAGCATTGTTTTCCGGCGGCGTTGTTTGCTATTCAAACGAAGTGAAGCAAAATGTCCTCGGC
GTCAAAAAGGAAACATTGGACCGTTTCGGCGCAGTCAGCGAGGAATGCGCATCTGAGCTCGCAAAGGGTGTTCAGCAGCT
CACTGGAAGCGATATTGGCATTAGCTTTACCGGTGTTGCCGGCCCTGATACTCAAGAAGGCCATGCACCTGGACATGTGT
TTATCGGTATTTTTGCAAACGGAAAAGAAGAGGTTCACGAGTTTCACTTTGCAGGCTCCAGAACAGGAATCAGAAAACGT
GCTGCTAAATATGGCTGCCATTTAATTTTAAAACTGTTAGAGCAAAAATAA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(184-257)

Probable molybdopterin binding domain (MoCF_biosynth)

(9-172)

Competence-damaged protein (CinA)

(261-412)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

95.913

100

0.959
  cinA Streptococcus mitis NCTC 12261

46.411

100

0.466
  cinA Streptococcus mitis SK321

46.411

100

0.466
  cinA Streptococcus pneumoniae TIGR4

46.172

100

0.464
  cinA Streptococcus pneumoniae Rx1

45.933

100

0.462
  cinA Streptococcus pneumoniae R6

45.933

100

0.462
  cinA Streptococcus mutans UA159

46.489

99.279

0.462
  cinA Streptococcus pneumoniae D39

45.694

100

0.459
  cinA Streptococcus suis isolate S10

42.021

90.385

0.38