Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   JW975_RS17040 Genome accession   NZ_CP070865
Coordinates   3839784..3841049 (+) Length   421 a.a.
NCBI ID   WP_011787902.1    Uniprot ID   A0A6N3J110
Organism   Shewanella putrefaciens strain XY07     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3834784..3846049
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JW975_RS17025 (JW975_17025) nadC 3835374..3836261 (+) 888 WP_011787905.1 carboxylating nicotinate-nucleotide diphosphorylase -
  JW975_RS17030 (JW975_17030) - 3837145..3837618 (+) 474 WP_025008133.1 type IV pilin protein -
  JW975_RS17035 (JW975_17035) pilB 3837693..3839402 (+) 1710 WP_061783195.1 type IV-A pilus assembly ATPase PilB Machinery gene
  JW975_RS17040 (JW975_17040) pilC 3839784..3841049 (+) 1266 WP_011787902.1 type II secretion system F family protein Machinery gene
  JW975_RS17045 (JW975_17045) pilD 3841215..3842141 (+) 927 WP_025008132.1 prepilin peptidase Machinery gene
  JW975_RS17050 (JW975_17050) coaE 3842484..3843101 (+) 618 WP_128090233.1 dephospho-CoA kinase -
  JW975_RS17055 (JW975_17055) zapD 3843094..3843828 (+) 735 WP_011787899.1 cell division protein ZapD -
  JW975_RS17060 (JW975_17060) yacG 3843986..3844195 (+) 210 WP_011920039.1 DNA gyrase inhibitor YacG -
  JW975_RS17065 (JW975_17065) mutT 3844247..3844651 (+) 405 WP_011787897.1 8-oxo-dGTP diphosphatase MutT -
  JW975_RS17070 (JW975_17070) - 3845200..3845736 (+) 537 WP_011787896.1 thioredoxin family protein -

Sequence

Protein


Download         Length: 421 a.a.        Molecular weight: 46325.74 Da        Isoelectric Point: 10.2387

>NTDB_id=541125 JW975_RS17040 WP_011787902.1 3839784..3841049(+) (pilC) [Shewanella putrefaciens strain XY07]
MATATTVKKPRPKKIEPKSQPKIFTFEWKGTNRDGKKTGGELKGATVAEVKSQLKSQGVNPKVVRKKASPFFARNPDIKP
MDIAMATRQIATMLAAGVPLVTTIEILGRGHEKLKMRDLLGTILSEIQSGIPLSDALRPHRRYFDDLYVDLVAAGEHSGS
LDAVFDRIATYREKAEQLKSKIKKAMFYPAAVVVVAILVTTLLLLFVVPQFEDIFKGFGAELPAFTQMIIGISRWLQSSW
YLFFIAITVGIWLFVRAHRNSQMVRDRVDEFVLKIPVIGEILHKAAMARFSRTLATTFAAGVPLIDGMESAAGASGNAVY
RKALLKVRQEVMAGMQMNVAMRTTGLFPDMLIQMVMIGEESGSLDNMLNKVANIYEMQVDDAVDGLSSLIEPIMMVVIGT
LVGGLIVGMYLPIFQMGNVVG

Nucleotide


Download         Length: 1266 bp        

>NTDB_id=541125 JW975_RS17040 WP_011787902.1 3839784..3841049(+) (pilC) [Shewanella putrefaciens strain XY07]
ATGGCTACGGCAACGACAGTAAAAAAGCCTCGCCCAAAGAAGATTGAGCCCAAAAGCCAACCAAAGATTTTTACCTTTGA
ATGGAAAGGCACTAACCGCGATGGCAAAAAAACGGGTGGTGAGTTAAAGGGTGCAACGGTTGCAGAGGTAAAAAGCCAGC
TCAAATCCCAAGGAGTAAATCCTAAAGTCGTACGAAAAAAAGCATCTCCTTTCTTTGCCCGTAATCCTGATATCAAGCCC
ATGGATATCGCGATGGCAACTCGCCAGATAGCGACTATGCTGGCCGCCGGCGTTCCGCTTGTGACCACAATAGAAATATT
GGGGCGTGGCCATGAAAAACTCAAAATGCGCGATCTGTTAGGGACAATTCTGTCAGAGATTCAATCGGGTATTCCGTTAT
CAGATGCCCTGCGCCCCCATAGGCGTTATTTTGATGATCTCTATGTAGACTTAGTGGCAGCAGGTGAACACTCAGGTTCG
CTCGATGCGGTATTTGATCGTATTGCAACCTATAGAGAAAAAGCCGAGCAGCTAAAATCTAAAATCAAAAAAGCCATGTT
TTATCCCGCCGCCGTTGTGGTCGTCGCTATTTTAGTGACCACATTGTTATTACTCTTTGTCGTACCTCAGTTCGAAGATA
TTTTTAAAGGATTTGGCGCTGAACTCCCCGCCTTTACACAGATGATCATTGGTATCTCGCGCTGGTTGCAAAGCTCTTGG
TATCTCTTTTTCATAGCGATTACAGTGGGGATTTGGTTATTTGTCCGTGCCCATCGCAATTCACAAATGGTTCGTGACCG
TGTTGATGAATTTGTACTTAAGATCCCTGTTATCGGCGAAATTCTGCATAAGGCAGCCATGGCGCGCTTTTCTCGTACCT
TAGCCACCACCTTTGCGGCAGGTGTGCCGTTGATTGATGGGATGGAATCCGCAGCGGGAGCATCGGGTAATGCCGTATAT
CGCAAAGCACTGTTAAAAGTACGCCAAGAGGTGATGGCTGGTATGCAAATGAACGTCGCGATGCGTACTACGGGTTTGTT
CCCCGATATGCTGATCCAAATGGTGATGATTGGTGAAGAGTCTGGATCGCTAGATAATATGCTAAATAAGGTGGCTAATA
TTTATGAAATGCAAGTCGATGACGCTGTGGATGGTTTATCGAGTCTAATTGAACCCATTATGATGGTGGTGATTGGCACC
CTTGTGGGTGGTTTAATTGTGGGAATGTATCTCCCTATCTTCCAAATGGGAAATGTCGTAGGCTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(290-412)

Type II secretion system (T2SS), protein F (T2SSF)

(87-209)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6N3J110

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

54.684

93.824

0.513
  pilC Acinetobacter baylyi ADP1

50.882

94.299

0.48
  pilC Legionella pneumophila strain ERS1305867

49.752

95.962

0.477
  pilC Acinetobacter baumannii D1279779

50.251

94.537

0.475
  pilC Vibrio cholerae strain A1552

46.867

94.774

0.444
  pilC Vibrio campbellii strain DS40M4

44.499

97.15

0.432
  pilG Neisseria gonorrhoeae MS11

41.294

95.487

0.394
  pilG Neisseria meningitidis 44/76-A

41.191

95.724

0.394