Detailed information NTG0541126

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: JW975_RS17045
• Genome accession: NZ_CP070865
• Coordinates: 3841215..3842141 (+)
• Length: 308 a.a.
• NCBI ID: WP_025008132.1
• Uniprot ID: -
• Organism: Shewanella putrefaciens strain XY07
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3836215..3847141

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
JW975_RS17030 (JW975_17030)	-	3837145..3837618 (+)	474	WP_025008133.1	type IV pilin protein	-
JW975_RS17035 (JW975_17035)	pilB	3837693..3839402 (+)	1710	WP_061783195.1	type IV-A pilus assembly ATPase PilB	Machinery gene
JW975_RS17040 (JW975_17040)	pilC	3839784..3841049 (+)	1266	WP_011787902.1	type II secretion system F family protein	Machinery gene
JW975_RS17045 (JW975_17045)	pilD	3841215..3842141 (+)	927	WP_025008132.1	prepilin peptidase	Machinery gene
JW975_RS17050 (JW975_17050)	coaE	3842484..3843101 (+)	618	WP_128090233.1	dephospho-CoA kinase	-
JW975_RS17055 (JW975_17055)	zapD	3843094..3843828 (+)	735	WP_011787899.1	cell division protein ZapD	-
JW975_RS17060 (JW975_17060)	yacG	3843986..3844195 (+)	210	WP_011920039.1	DNA gyrase inhibitor YacG	-
JW975_RS17065 (JW975_17065)	mutT	3844247..3844651 (+)	405	WP_011787897.1	8-oxo-dGTP diphosphatase MutT	-
JW975_RS17070 (JW975_17070)	-	3845200..3845736 (+)	537	WP_011787896.1	thioredoxin family protein	-
JW975_RS17075 (JW975_17075)	-	3846004..3846930 (-)	927	WP_061783194.1	exopolyphosphatase	-

Sequence

Protein

• Length: 308 a.a.
• Molecular weight: 34356.68 Da
• Isoelectric Point: 6.5934

>NTDB_id=541126 JW975_RS17045 WP_025008132.1 3841215..3842141(+) (pilD) [Shewanella putrefaciens strain XY07]
MTEFITLLGQSFEQSPWLFVTLSFIFAATIGSFLNVVIHRLPIMMKREWQQECNQYLQEYHADIVNQVGIDRLNKPIDSY
PEKYNIVVPGSACPQCKTAIKPWHNLPVLGWLILRGKCAACHAPISTRYPIIELITGLLIAALAWHFGPSWQFVFASLLT
FVLIALTGIDLDEMLLPDQLTLPLLWLGLLLNLHHTFASPTDAIIGAAAGYLSLWSIFWVFKLLTGKEGMGYGDFKLLAV
FGAWLGWQMLPLVILLSSLVGAVVGIGMIISKRNQMDNPIPFGPYIAAAGWIALVWGNTIIDWYLGTL

Nucleotide

• Length: 927 bp

>NTDB_id=541126 JW975_RS17045 WP_025008132.1 3841215..3842141(+) (pilD) [Shewanella putrefaciens strain XY07]
ATGACTGAATTTATCACTTTATTAGGCCAATCTTTTGAACAGAGTCCTTGGCTCTTCGTCACCTTAAGCTTTATTTTTGC
CGCGACTATTGGCAGTTTTCTGAATGTGGTCATCCACCGACTCCCTATCATGATGAAGCGTGAATGGCAGCAGGAATGTA
ATCAATATTTACAGGAATACCATGCGGATATCGTTAACCAAGTCGGTATCGATAGGCTTAATAAACCCATAGATAGCTAT
CCCGAAAAGTACAATATTGTGGTGCCAGGCTCAGCTTGCCCTCAGTGTAAAACCGCCATCAAACCTTGGCATAATTTGCC
AGTTCTCGGTTGGTTAATCCTTAGGGGGAAATGCGCCGCCTGTCATGCACCTATCTCGACCCGTTATCCGATTATTGAAT
TAATCACAGGTTTACTGATCGCAGCTCTAGCTTGGCATTTTGGCCCCAGTTGGCAATTTGTTTTTGCCTCTTTACTCACC
TTTGTATTGATTGCGCTGACTGGTATAGATCTGGATGAAATGTTATTACCGGATCAGTTAACACTGCCCCTACTGTGGCT
TGGGCTATTACTCAATTTACACCATACCTTTGCTAGCCCAACGGATGCCATTATCGGTGCAGCCGCAGGCTATTTAAGCC
TATGGTCAATTTTCTGGGTGTTTAAGTTACTCACAGGTAAAGAAGGTATGGGCTATGGCGACTTTAAACTGTTGGCCGTT
TTTGGTGCTTGGCTTGGCTGGCAAATGTTGCCACTGGTGATTTTACTCTCCTCATTAGTGGGTGCTGTTGTGGGCATTGG
CATGATTATCAGCAAACGTAATCAGATGGATAACCCTATTCCCTTTGGCCCTTATATTGCCGCCGCAGGCTGGATTGCAC
TGGTTTGGGGAAACACTATCATCGACTGGTATTTAGGGACACTATAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (25-147)

• Type IV leader peptidase family (Peptidase_A24) (159-266)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	53.156	97.727	0.519
pilD	Vibrio campbellii strain DS40M4	51.333	97.403	0.5
pilD	Acinetobacter baumannii D1279779	48.789	93.831	0.458
pilD	Acinetobacter nosocomialis M2	48.789	93.831	0.458
pilD	Neisseria gonorrhoeae MS11	43.448	94.156	0.409