Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   JWR96_RS12370 Genome accession   NZ_CP070856
Coordinates   1229297..1229701 (+) Length   134 a.a.
NCBI ID   WP_236683848.1    Uniprot ID   A0AAX4AGK3
Organism   Lactococcus cremoris strain GR0507     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1224297..1234701
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JWR96_RS06030 (JWR96_06030) - 1224563..1225330 (-) 768 WP_043734746.1 5'-nucleotidase -
  JWR96_RS06035 (JWR96_06035) - 1225440..1226459 (-) 1020 WP_043734747.1 DUF475 domain-containing protein -
  JWR96_RS06040 (JWR96_06040) - 1226525..1227025 (-) 501 WP_014572521.1 VanZ family protein -
  JWR96_RS06045 (JWR96_06045) - 1227067..1227702 (-) 636 WP_011835331.1 YigZ family protein -
  JWR96_RS12365 comFA 1227759..1228064 (+) 306 WP_236683847.1 hypothetical protein Machinery gene
  JWR96_RS06050 (JWR96_06050) comFA 1228119..1229051 (+) 933 WP_236683854.1 helicase-related protein Machinery gene
  JWR96_RS12370 comFC 1229297..1229701 (+) 405 WP_236683848.1 hypothetical protein Machinery gene
  JWR96_RS06060 (JWR96_06060) - 1229760..1230338 (-) 579 WP_043734749.1 nucleotidyltransferase family protein -
  JWR96_RS06065 (JWR96_06065) - 1230355..1230810 (-) 456 WP_043734751.1 diacylglycerol kinase -
  JWR96_RS06070 (JWR96_06070) ybeY 1230794..1231282 (-) 489 WP_011835335.1 rRNA maturation RNase YbeY -
  JWR96_RS06075 (JWR96_06075) - 1231512..1232000 (-) 489 WP_021037144.1 NUDIX hydrolase -
  JWR96_RS06080 (JWR96_06080) - 1232070..1233023 (-) 954 WP_043734936.1 PhoH family protein -
  JWR96_RS06085 (JWR96_06085) - 1233112..1234644 (-) 1533 WP_043734753.1 Nramp family divalent metal transporter -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 15674.21 Da        Isoelectric Point: 10.1001

>NTDB_id=541090 JWR96_RS12370 WP_236683848.1 1229297..1229701(+) (comFC) [Lactococcus cremoris strain GR0507]
MKDYFSLYKFMGDYRLHEVFDSYFKNLSKKIPLVPIPVSPKRLQERGFNQVTAFLKDRTYLDLLEKGDTVRQSSLNREGR
LSTTNPFKLKEGEKIPQKIILIDDIYTTGTTFYHAIKTLKKANPIEITTFSLCR

Nucleotide


Download         Length: 405 bp        

>NTDB_id=541090 JWR96_RS12370 WP_236683848.1 1229297..1229701(+) (comFC) [Lactococcus cremoris strain GR0507]
ATGAAGGATTACTTTAGTCTTTACAAATTTATGGGAGATTATCGATTACACGAAGTCTTCGATTCCTATTTTAAAAATTT
GTCCAAAAAAATTCCTCTGGTTCCCATTCCGGTTTCTCCTAAAAGATTACAAGAAAGAGGTTTTAACCAAGTAACAGCTT
TTCTAAAAGATAGAACTTATCTTGACTTGCTTGAAAAAGGGGATACTGTCAGACAATCAAGCCTTAATCGCGAGGGACGT
TTATCAACTACCAATCCTTTTAAGTTGAAAGAGGGTGAAAAAATACCCCAAAAAATCATTTTGATTGATGATATTTATAC
AACTGGAACTACTTTTTATCATGCAATAAAAACCTTAAAGAAAGCTAATCCGATTGAAATTACAACTTTCTCACTCTGCC
GTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Lactococcus lactis subsp. cremoris KW2

99.254

100

0.993
  comFC/cflB Streptococcus mitis NCTC 12261

50.36

100

0.522
  comFC/cflB Streptococcus pneumoniae TIGR4

48.921

100

0.507
  comFC/cflB Streptococcus pneumoniae Rx1

48.921

100

0.507
  comFC/cflB Streptococcus pneumoniae D39

48.921

100

0.507
  comFC/cflB Streptococcus pneumoniae R6

48.921

100

0.507
  comFC/cflB Streptococcus mitis SK321

48.201

100

0.5
  comFC Latilactobacillus sakei subsp. sakei 23K

37.241

100

0.403
  comFC Bacillus subtilis subsp. subtilis str. 168

37.063

100

0.396