Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   JWR96_RS12365 Genome accession   NZ_CP070856
Coordinates   1227759..1228064 (+) Length   101 a.a.
NCBI ID   WP_236683847.1    Uniprot ID   A0AAX4A500
Organism   Lactococcus cremoris strain GR0507     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1222759..1233064
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JWR96_RS06025 (JWR96_06025) glyQ 1223381..1224334 (-) 954 WP_011676101.1 glycine--tRNA ligase subunit alpha -
  JWR96_RS06030 (JWR96_06030) - 1224563..1225330 (-) 768 WP_043734746.1 5'-nucleotidase -
  JWR96_RS06035 (JWR96_06035) - 1225440..1226459 (-) 1020 WP_043734747.1 DUF475 domain-containing protein -
  JWR96_RS06040 (JWR96_06040) - 1226525..1227025 (-) 501 WP_014572521.1 VanZ family protein -
  JWR96_RS06045 (JWR96_06045) - 1227067..1227702 (-) 636 WP_011835331.1 YigZ family protein -
  JWR96_RS12365 comFA 1227759..1228064 (+) 306 WP_236683847.1 hypothetical protein Machinery gene
  JWR96_RS06050 (JWR96_06050) comFA 1228119..1229051 (+) 933 WP_236683854.1 helicase-related protein Machinery gene
  JWR96_RS12370 comFC 1229297..1229701 (+) 405 WP_236683848.1 hypothetical protein Machinery gene
  JWR96_RS06060 (JWR96_06060) - 1229760..1230338 (-) 579 WP_043734749.1 nucleotidyltransferase family protein -
  JWR96_RS06065 (JWR96_06065) - 1230355..1230810 (-) 456 WP_043734751.1 diacylglycerol kinase -
  JWR96_RS06070 (JWR96_06070) ybeY 1230794..1231282 (-) 489 WP_011835335.1 rRNA maturation RNase YbeY -
  JWR96_RS06075 (JWR96_06075) - 1231512..1232000 (-) 489 WP_021037144.1 NUDIX hydrolase -
  JWR96_RS06080 (JWR96_06080) - 1232070..1233023 (-) 954 WP_043734936.1 PhoH family protein -

Sequence

Protein


Download         Length: 101 a.a.        Molecular weight: 11633.51 Da        Isoelectric Point: 8.5006

>NTDB_id=541089 JWR96_RS12365 WP_236683847.1 1227759..1228064(+) (comFA) [Lactococcus cremoris strain GR0507]
MNLILENLLGRLLLEKDISAFNNFTDQVNNENKLIKIGAMTSVNANKVRCNRCGTIHIKTNVKLPIGAFFCPTCLELGRV
RSDEYFYHLPQQDFPEKTYLR

Nucleotide


Download         Length: 306 bp        

>NTDB_id=541089 JWR96_RS12365 WP_236683847.1 1227759..1228064(+) (comFA) [Lactococcus cremoris strain GR0507]
ATGAACTTAATTTTAGAAAATCTCCTTGGGCGTCTTTTACTAGAAAAAGATATTTCAGCTTTTAATAATTTTACTGACCA
AGTTAACAATGAAAACAAATTAATTAAAATTGGTGCAATGACATCTGTCAATGCTAATAAAGTAAGATGTAATCGATGTG
GCACGATTCATATAAAAACCAATGTTAAACTTCCGATTGGTGCTTTTTTCTGTCCAACTTGTCTTGAACTTGGTCGTGTC
CGCTCAGATGAATATTTCTACCATCTTCCTCAACAAGACTTTCCAGAAAAAACTTATTTACGTTAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Lactococcus lactis subsp. cremoris KW2

99.01

100

0.99