Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   JWR96_RS06050 Genome accession   NZ_CP070856
Coordinates   1228119..1229051 (+) Length   310 a.a.
NCBI ID   WP_236683854.1    Uniprot ID   -
Organism   Lactococcus cremoris strain GR0507     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1223119..1234051
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JWR96_RS06025 (JWR96_06025) glyQ 1223381..1224334 (-) 954 WP_011676101.1 glycine--tRNA ligase subunit alpha -
  JWR96_RS06030 (JWR96_06030) - 1224563..1225330 (-) 768 WP_043734746.1 5'-nucleotidase -
  JWR96_RS06035 (JWR96_06035) - 1225440..1226459 (-) 1020 WP_043734747.1 DUF475 domain-containing protein -
  JWR96_RS06040 (JWR96_06040) - 1226525..1227025 (-) 501 WP_014572521.1 VanZ family protein -
  JWR96_RS06045 (JWR96_06045) - 1227067..1227702 (-) 636 WP_011835331.1 YigZ family protein -
  JWR96_RS12365 comFA 1227759..1228064 (+) 306 WP_236683847.1 hypothetical protein Machinery gene
  JWR96_RS06050 (JWR96_06050) comFA 1228119..1229051 (+) 933 WP_236683854.1 helicase-related protein Machinery gene
  JWR96_RS12370 comFC 1229297..1229701 (+) 405 WP_236683848.1 hypothetical protein Machinery gene
  JWR96_RS06060 (JWR96_06060) - 1229760..1230338 (-) 579 WP_043734749.1 nucleotidyltransferase family protein -
  JWR96_RS06065 (JWR96_06065) - 1230355..1230810 (-) 456 WP_043734751.1 diacylglycerol kinase -
  JWR96_RS06070 (JWR96_06070) ybeY 1230794..1231282 (-) 489 WP_011835335.1 rRNA maturation RNase YbeY -
  JWR96_RS06075 (JWR96_06075) - 1231512..1232000 (-) 489 WP_021037144.1 NUDIX hydrolase -
  JWR96_RS06080 (JWR96_06080) - 1232070..1233023 (-) 954 WP_043734936.1 PhoH family protein -

Sequence

Protein


Download         Length: 310 a.a.        Molecular weight: 35547.54 Da        Isoelectric Point: 10.3794

>NTDB_id=541070 JWR96_RS06050 WP_236683854.1 1228119..1229051(+) (comFA) [Lactococcus cremoris strain GR0507]
MTNNQKLLVQAVTGAGKTEMIYQLIEQILSHGGSVGLASPRIDVCIELHQRLSRDFTCQIPLLYHEGDSYFRSPLVVMTS
HQLLRFKEAFDLLIIDEVDAFPFRDNDMLYFALENAKKINGTLLYLTATSTDKLDKQIKKHEIKRLFLPRRFHGHPLVIP
KFFWKKTFYKKFIEQRKTGFPLLIFVAEIDFGQDFAKNLQEKFPKERMAFVASTTKSRKTIVEAFRKKQVSILITTSILE
RGVTFSSIDVFVINSEHPNFTKSALIQMAGRVGRDSKRPTGLVSFFHSGKSLAMCQAQKEIKKMNQLGGF

Nucleotide


Download         Length: 933 bp        

>NTDB_id=541070 JWR96_RS06050 WP_236683854.1 1228119..1229051(+) (comFA) [Lactococcus cremoris strain GR0507]
ATTACTAATAATCAAAAACTACTTGTTCAAGCCGTTACTGGTGCTGGTAAAACAGAAATGATATATCAGCTTATTGAACA
AATTCTTAGCCATGGGGGTTCGGTCGGTTTAGCCAGCCCAAGAATTGATGTATGCATTGAGCTTCATCAACGTTTATCAC
GTGATTTCACTTGTCAAATTCCCCTTTTGTATCATGAGGGAGATTCTTATTTTCGTTCGCCTTTGGTCGTTATGACCAGT
CACCAACTCTTACGTTTCAAAGAGGCCTTTGATTTGCTTATCATCGATGAAGTCGATGCCTTTCCTTTTAGAGATAATGA
CATGCTTTATTTCGCTCTTGAAAATGCTAAAAAAATTAATGGAACCTTGCTCTACTTAACCGCTACATCTACTGACAAAT
TAGACAAACAGATAAAAAAGCATGAAATTAAACGACTTTTTTTACCACGCCGCTTTCACGGTCATCCTTTGGTCATTCCA
AAGTTTTTTTGGAAAAAAACATTTTATAAAAAATTCATTGAGCAAAGAAAGACTGGTTTCCCACTTCTAATTTTCGTTGC
CGAAATCGACTTCGGTCAAGACTTTGCCAAAAATTTACAAGAAAAATTTCCAAAAGAAAGAATGGCTTTTGTCGCTTCAA
CAACTAAAAGCAGAAAAACGATTGTCGAAGCTTTTCGTAAGAAACAAGTTTCGATTTTAATTACGACTTCTATTCTTGAA
CGAGGCGTAACTTTTTCTTCGATTGATGTCTTTGTCATTAATAGCGAACACCCTAATTTCACAAAATCTGCCCTCATTCA
AATGGCCGGACGAGTGGGACGAGACTCTAAACGTCCAACAGGATTAGTTAGTTTTTTTCACTCTGGAAAATCTTTAGCCA
TGTGTCAAGCTCAGAAAGAAATTAAAAAAATGAACCAACTCGGAGGTTTTTAA

Domains

Predicted by InterproScan.

Type III restriction enzyme, res subunit (ResIII)

(3-129)

Helicase conserved C-terminal domain (Helicase_C)

(170-274)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Lactococcus lactis subsp. cremoris KW2

98.71

100

0.987
  comFA/cflA Streptococcus mitis SK321

55

100

0.568
  comFA/cflA Streptococcus pneumoniae Rx1

55.696

100

0.568
  comFA/cflA Streptococcus pneumoniae TIGR4

55.696

100

0.568
  comFA/cflA Streptococcus pneumoniae D39

55.696

100

0.568
  comFA/cflA Streptococcus pneumoniae R6

55.696

100

0.568
  comFA/cflA Streptococcus mitis NCTC 12261

55.38

100

0.565
  comFA Bacillus subtilis subsp. subtilis str. 168

40.123

100

0.419
  comFA Latilactobacillus sakei subsp. sakei 23K

39.297

100

0.397