Detailed information    

insolico Bioinformatically predicted

Overview


Name   chpA   Type   Regulator
Locus tag   I6J48_RS12415 Genome accession   NZ_CP070518
Coordinates   2615387..2619892 (+) Length   1501 a.a.
NCBI ID   WP_205468574.1    Uniprot ID   -
Organism   Acinetobacter calcoaceticus strain FDAARGOS_1218     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context


Location: 2610387..2624892
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6J48_RS12390 (I6J48_12390) - 2610825..2611463 (-) 639 WP_205468573.1 hypothetical protein -
  I6J48_RS12395 (I6J48_12395) pilG 2611749..2612132 (+) 384 WP_000389061.1 twitching motility response regulator PilG Regulator
  I6J48_RS12400 (I6J48_12400) - 2612156..2612518 (+) 363 WP_005036319.1 PleD family two-component system response regulator -
  I6J48_RS12405 (I6J48_12405) - 2612578..2613114 (+) 537 WP_005309806.1 chemotaxis protein CheW -
  I6J48_RS12410 (I6J48_12410) - 2613157..2615238 (+) 2082 WP_017392491.1 methyl-accepting chemotaxis protein -
  I6J48_RS12415 (I6J48_12415) chpA 2615387..2619892 (+) 4506 WP_205468574.1 hybrid sensor histidine kinase/response regulator Regulator
  I6J48_RS12420 (I6J48_12420) - 2619892..2620359 (+) 468 WP_004639007.1 hypothetical protein -
  I6J48_RS12425 (I6J48_12425) dapE 2620395..2621531 (-) 1137 WP_205468575.1 succinyl-diaminopimelate desuccinylase -
  I6J48_RS12430 (I6J48_12430) - 2621657..2621800 (-) 144 WP_003655297.1 entericidin A/B family lipoprotein -
  I6J48_RS12435 (I6J48_12435) - 2621923..2622804 (-) 882 WP_205468576.1 DUF1853 family protein -
  I6J48_RS12440 (I6J48_12440) - 2622908..2623267 (+) 360 WP_004639014.1 YbaN family protein -
  I6J48_RS12445 (I6J48_12445) elsL 2623486..2623989 (+) 504 WP_205468577.1 cell wall-recycling L,D-carboxypeptidase ElsL -

Sequence


Protein


Download         Length: 1501 a.a.        Molecular weight: 171399.71 Da        Isoelectric Point: 4.4563

>NTDB_id=540505 I6J48_RS12415 WP_205468574.1 2615387..2619892(+) (chpA) [Acinetobacter calcoaceticus strain FDAARGOS_1218]
MKEILKTLTEAMMLPEDSYSQQDAEFLDIFVEEIEEIFVELQSLIHEWMQSKNVATLTEIRRHFHTLKGSGRMIAAKSSA
ELAWTVEDTLNRVINESLTLTPNIQQYVQLVFKFYFFKLVDDFKSKKQHAVDFRPLILLGQQLQQQQSLEPALEELLLLS
DTLTAETKTGLEVGDLEQESDNLTLETAVESEHNLAETLVLFMEEAEEHLATIDQFLEQEIHQHESYNALIRALHTLRGS
SAMAQVEAIFDASTKVEHLFKILLQEELSSHSEEILLLRDYRQFIRNCLDLLAAHCSNEQLESNLKQFNQVWDAYMEQHG
EHASPLTPPHGLVSQLLQLDVSELLDAELDFEKGIRSEFPHYLERLSEQADLLLQHTQSQAMVGLYEYTNQLKDSYDVLL
DRPDLLQSDYVFEIYQKAHQQLIQLFDALAAGQRVSIIEQHQNILEELKLYTQYIPSLNSEPLDTHQEVVESLFSADIEQ
TANESSVSVESVLTDHVVMSQSVHLDRQFMSTEHVNRYFDPELLDIFLEEADELLEGMDTDLNIWVNNQENFAALNNLMR
YLHTLKGGANMIQANYIGLIAHELESIYERLIQRQLITSSALIDFIRLVQDDLADRLQIVREQHLDYAASHTIQALKNAG
KVYNSLGSAAKEMQAESETDVIPESSVEVLQQEAIHNTALNLDELTSNFEQIVESNSRLVEHTELPVFDAEGYTDSIQDQ
DIDSVVEQTFMEEAAELLEMADHLLKQWFEQRTNRSILLQLQRAVHSLKGGSRMVGLETVQAIAYQLENAFEKFALYHFS
SNIYDNLLESAIVWLKEAIFKQNYQHFDGLQQSLENIQFIETAIQIPSKLTRTDLFSTEPVMSFVQGDGAEPPPMMGAWE
QAQHLEQNNEMIRVSADLIEKMIDLSGENSINRSRIEMDLSQFGHTLVEMELAIQRLADQLRRMEGELESQIIAKHGIEH
SRYTEFDPLEMDQYSSLNQLSKSLAESASDLVDFKNTLSEKIRDTESLLVQQSRIQAEIQEGLMRTRLVPFSRLLPRLQR
IVRQTSTALDRPAELFVNNTEGELDRTMLERLVTPLEHMLRNAIDHGLEERVQREQARKPETGRIELNIHRQGTDVVVTF
KDDGRGIDIEKVRQKALLSGLINSEQVLEHQDILQLIFHPGLSTADQVTQISGRGVGLDVVQSDIKALGGHVSVDSVYGQ
GTIFTIRVPTTVAVSDALMVKVADQQFAIPLAQIDRIVRVSPTSLEQYFGSTQEFFEFENKRYPLRYLSEFVGNQPIPRL
SGMMYSLPVLMIKTNNGQTIALLVDQLIGSRAQIVVKPIGQQFSSIGAIAGATILGDGQVCLILDGQNIARQIQSTRRHK
QLNEAIYRQRESDERRLIMIVDDSVTVRKVTTRLLERQGYDVVTAKDGIDAIEQLENIKPDLMLLDIEMPRMDGFEVLNL
VRHHDLHQDMPVIMITSRTGEKHRERAFTLGVNQYMGKPFQEEDLLHNIDAFFTTREEELA

Nucleotide


Download         Length: 4506 bp        

>NTDB_id=540505 I6J48_RS12415 WP_205468574.1 2615387..2619892(+) (chpA) [Acinetobacter calcoaceticus strain FDAARGOS_1218]
ATGAAAGAAATATTAAAAACTTTAACTGAAGCAATGATGCTACCGGAAGATAGCTATTCTCAACAAGATGCTGAATTTCT
TGATATCTTCGTTGAAGAAATTGAAGAAATTTTTGTTGAATTGCAATCTTTGATTCATGAATGGATGCAATCTAAAAATG
TTGCTACGCTGACTGAAATCCGTCGCCATTTTCATACCTTGAAAGGTTCGGGGCGAATGATTGCAGCGAAATCCTCTGCT
GAGCTTGCTTGGACTGTAGAGGATACGCTTAATCGGGTAATCAATGAGAGTCTCACATTAACTCCTAACATCCAACAATA
TGTTCAGTTGGTATTTAAGTTCTATTTCTTTAAATTGGTAGATGACTTTAAATCTAAAAAGCAACATGCAGTAGATTTTA
GACCTCTTATTTTATTGGGACAACAATTACAACAACAGCAAAGTCTAGAGCCTGCTTTAGAAGAACTTCTATTATTGTCG
GATACTCTCACTGCGGAAACTAAGACTGGTTTAGAGGTGGGTGATTTAGAACAGGAATCAGATAATTTAACTCTAGAAAC
CGCCGTAGAAAGTGAACATAACCTTGCTGAAACCTTAGTTTTATTTATGGAAGAAGCGGAGGAGCACTTAGCGACCATCG
ATCAGTTCTTAGAACAAGAAATACATCAGCACGAGAGTTACAATGCATTAATCCGTGCATTACATACGCTGCGCGGCAGC
TCGGCAATGGCTCAGGTAGAAGCAATTTTTGATGCTAGTACTAAAGTTGAGCATTTATTTAAAATCCTATTACAAGAAGA
GCTTTCTTCTCATTCAGAAGAAATTTTACTACTCCGTGATTACCGCCAGTTTATTCGAAATTGTTTAGATCTATTGGCTG
CGCATTGCTCTAATGAGCAATTAGAATCTAACCTGAAACAGTTCAATCAGGTTTGGGATGCTTATATGGAGCAGCATGGG
GAGCATGCGAGCCCGCTCACGCCTCCACATGGTTTAGTATCTCAGTTGTTACAGCTAGATGTTTCAGAATTACTTGATGC
AGAGTTAGATTTTGAGAAAGGAATTCGTTCTGAGTTTCCTCATTATCTTGAACGTTTAAGTGAACAAGCTGATTTGTTAT
TGCAACATACTCAGTCGCAGGCCATGGTTGGTTTATATGAATATACGAACCAGCTGAAAGATAGCTATGACGTATTGCTT
GATCGACCTGATTTATTACAATCAGATTATGTTTTTGAAATTTATCAGAAAGCACATCAACAATTAATTCAGTTATTTGA
TGCATTAGCTGCGGGTCAAAGAGTTAGTATTATTGAGCAACACCAAAATATTTTGGAAGAGCTAAAACTATATACTCAAT
ATATTCCAAGCCTTAATTCTGAACCATTAGACACTCATCAGGAAGTCGTTGAGTCACTATTTAGTGCTGATATAGAACAA
ACAGCAAATGAATCTTCAGTATCTGTCGAAAGTGTATTAACTGATCATGTAGTCATGAGTCAGAGTGTGCATTTAGATCG
CCAGTTCATGTCTACTGAGCACGTAAATCGTTATTTCGATCCAGAACTGTTAGATATTTTTCTTGAAGAAGCCGATGAGT
TGCTTGAAGGAATGGATACAGATCTTAATATTTGGGTTAATAATCAAGAGAACTTTGCTGCTCTTAATAATCTGATGCGC
TATTTGCATACCTTAAAAGGTGGGGCAAATATGATTCAGGCAAATTATATTGGTTTAATTGCACATGAATTAGAAAGTAT
TTATGAGCGCTTAATTCAAAGACAGTTAATTACTTCATCTGCTCTCATTGATTTTATCCGTCTGGTCCAAGATGATTTAG
CTGATCGCCTACAAATAGTACGTGAACAGCACCTAGATTATGCTGCTTCTCATACTATTCAAGCACTTAAGAATGCAGGT
AAGGTATATAATTCCCTCGGGTCTGCTGCTAAAGAGATGCAAGCAGAGTCTGAAACAGATGTTATACCGGAATCAAGTGT
TGAAGTATTACAACAAGAAGCTATACACAATACTGCGTTAAATCTCGATGAGTTAACTTCTAATTTTGAGCAGATTGTTG
AGTCTAATAGTAGACTTGTTGAACACACAGAATTACCAGTTTTTGATGCAGAAGGTTATACAGACAGTATCCAAGATCAG
GATATTGACTCTGTTGTCGAGCAGACCTTTATGGAGGAAGCTGCCGAGCTGTTAGAGATGGCCGATCACCTATTAAAGCA
GTGGTTTGAGCAGCGTACCAATCGTAGTATCTTGCTTCAGCTACAAAGGGCTGTGCACAGCTTGAAGGGTGGTTCCCGTA
TGGTGGGACTTGAAACCGTACAAGCGATTGCCTATCAACTTGAAAATGCTTTTGAAAAATTTGCGCTTTATCATTTTAGC
TCAAATATTTATGACAACTTGCTAGAGAGTGCGATTGTTTGGTTAAAAGAAGCAATTTTTAAACAAAATTATCAACATTT
CGATGGTTTACAACAAAGTTTAGAAAATATTCAGTTTATTGAAACTGCAATACAGATTCCAAGTAAGTTGACCAGAACTG
ATTTATTTAGTACTGAACCTGTAATGAGCTTTGTGCAAGGTGATGGGGCAGAACCACCGCCAATGATGGGGGCATGGGAA
CAAGCACAGCATCTTGAACAAAATAATGAGATGATCCGAGTTTCGGCAGATTTAATTGAGAAAATGATTGATTTGTCTGG
TGAAAATTCGATTAACCGTTCACGAATTGAAATGGATCTCAGTCAATTTGGTCATACGTTAGTGGAAATGGAATTAGCCA
TTCAACGACTAGCAGACCAGTTACGTCGAATGGAAGGCGAATTAGAAAGCCAGATTATTGCAAAACACGGTATTGAGCAT
TCTCGTTATACAGAATTTGACCCTCTAGAGATGGACCAATATTCTTCATTGAATCAATTATCGAAATCACTTGCCGAATC
TGCATCGGATTTAGTGGATTTTAAAAATACATTATCTGAAAAAATCAGAGACACTGAAAGTTTGCTGGTACAACAGTCAC
GTATTCAGGCCGAAATTCAAGAAGGCCTCATGCGAACACGATTAGTACCATTCTCTCGATTGCTACCTCGTTTACAAAGA
ATTGTGAGGCAGACTTCTACTGCGTTGGATCGACCAGCAGAGCTTTTTGTTAATAATACCGAAGGTGAATTAGACCGGAC
AATGCTAGAGCGTTTGGTTACACCACTTGAGCACATGCTTCGAAATGCAATTGACCATGGTTTAGAAGAGCGTGTGCAAC
GTGAACAAGCGCGAAAACCAGAAACTGGACGTATTGAACTGAATATTCATCGTCAAGGTACGGATGTTGTTGTTACATTT
AAGGATGATGGCCGAGGTATTGATATCGAGAAGGTCCGTCAAAAGGCCTTATTGTCTGGTTTGATTAATTCTGAGCAAGT
ATTAGAACATCAAGATATTTTACAGTTGATTTTCCATCCAGGGTTAAGTACAGCCGATCAAGTCACTCAGATTTCAGGTC
GTGGTGTAGGACTAGATGTTGTACAAAGTGATATTAAAGCTTTGGGCGGACATGTGAGTGTGGACTCTGTGTATGGGCAA
GGAACAATCTTTACCATACGCGTTCCAACCACAGTAGCTGTTAGTGATGCCTTAATGGTTAAAGTGGCTGATCAGCAATT
TGCAATTCCATTGGCCCAAATTGATCGAATTGTTCGAGTTTCACCAACATCATTAGAACAGTATTTCGGAAGCACACAAG
AATTCTTTGAATTTGAAAATAAACGCTATCCATTACGCTATTTATCTGAGTTTGTTGGTAATCAACCGATTCCACGTTTA
AGCGGGATGATGTATTCACTACCAGTATTAATGATTAAGACCAATAATGGACAAACAATTGCATTATTGGTTGATCAGCT
TATTGGTTCACGTGCGCAGATTGTGGTTAAGCCAATCGGGCAGCAGTTCTCTAGTATTGGTGCGATTGCAGGCGCAACTA
TTTTAGGTGATGGTCAAGTTTGTCTAATTTTAGATGGACAAAATATTGCTCGCCAAATTCAGTCTACCCGCCGACATAAG
CAGCTTAATGAAGCTATCTATAGACAACGTGAGTCTGATGAACGCCGTCTCATTATGATTGTAGATGACTCTGTCACAGT
CCGTAAGGTAACGACTCGTTTACTTGAACGTCAGGGCTATGACGTAGTAACTGCTAAAGATGGTATTGATGCAATTGAGC
AGTTGGAAAATATTAAACCAGATCTGATGCTGCTTGATATCGAAATGCCGCGAATGGATGGCTTTGAGGTACTTAACCTC
GTACGACATCATGATCTACATCAAGATATGCCAGTCATTATGATTACATCTAGAACTGGCGAAAAACACCGTGAACGAGC
ATTTACTTTAGGGGTTAACCAATACATGGGTAAACCTTTCCAAGAAGAAGACTTACTTCACAATATTGATGCTTTTTTCA
CGACACGTGAAGAGGAACTTGCCTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  chpA Acinetobacter baumannii strain A118

79.457

100

0.799