Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   I6J48_RS10670 Genome accession   NZ_CP070518
Coordinates   2265258..2267411 (+) Length   717 a.a.
NCBI ID   WP_205468440.1    Uniprot ID   -
Organism   Acinetobacter calcoaceticus strain FDAARGOS_1218     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2260258..2272411
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6J48_RS10650 (I6J48_10650) pilM 2262212..2263270 (+) 1059 WP_205468438.1 pilus assembly protein PilM Machinery gene
  I6J48_RS10655 (I6J48_10655) pilN 2263270..2263911 (+) 642 WP_205468439.1 PilN domain-containing protein Machinery gene
  I6J48_RS10660 (I6J48_10660) pilO 2263908..2264657 (+) 750 WP_005038271.1 type 4a pilus biogenesis protein PilO Machinery gene
  I6J48_RS10665 (I6J48_10665) pilP 2264668..2265195 (+) 528 WP_003653811.1 pilus assembly protein PilP Machinery gene
  I6J48_RS10670 (I6J48_10670) pilQ 2265258..2267411 (+) 2154 WP_205468440.1 type IV pilus secretin PilQ family protein Machinery gene
  I6J48_RS10675 (I6J48_10675) aroK 2267423..2267992 (+) 570 WP_003653807.1 shikimate kinase AroK -
  I6J48_RS10680 (I6J48_10680) aroB 2268021..2269103 (+) 1083 WP_205468441.1 3-dehydroquinate synthase -
  I6J48_RS10685 (I6J48_10685) - 2269120..2270001 (+) 882 WP_205468442.1 hypothetical protein -

Sequence

Protein


Download         Length: 717 a.a.        Molecular weight: 77576.73 Da        Isoelectric Point: 5.4782

>NTDB_id=540492 I6J48_RS10670 WP_205468440.1 2265258..2267411(+) (pilQ) [Acinetobacter calcoaceticus strain FDAARGOS_1218]
MNHVFRQFSMGAVAIAVMQVASAQVSMTNIVPTQIAGQGTEIRVMFNGLPPQPQAYQLENPSRLILDFNKAQQTLTQSKV
AIGTNEASSVDVSSDDQRSRLTVNLKEAGAFTTRIEGNTFILKINSAQAAIKPLSTNTIQPQGVSNVGFQRGSQGEGLIV
IDLLGSNTPVDVQQQGSKVVVRTLGSKIPAHLAKRLNVNDFATPVSTIESYNEKGNGVITIQSTGSYEYMAYQAENKLTI
SLKRPQDKNVTSLYKTPNYSGNKLSLDFQDIEVRRVLQLLADFTGINMVAADSVQGNITLRLKDVPWDQALDIILKTKNL
DKRRNGNVIWIAPVAELIKAEEEEAKAVAQSVKLAPLQTEYIQLKYAQAQDIMGLITQGSNNSNGLQRTSAGGTSTSTNL
NTGVDSLGNNVGSLLSPRGTITQDDRTNTLIINDTAQSIDQIRKMIDLLDVQVKQVMVEARIVRASTSFTKELGVKWGIL
SQGVNSNNSLLVGGSDTTLWNLREPDDEGKYTIERPDNLNVDLGVTSAGASSIAFSLISMSDFMLDLELSALQADGYGEV
ISTPKVMTADKQRARVATGQQVPYQTTTNSASGSTATTSFKDALLSLDVTPSITPDGKIQMKLDISKDSVADSAPNGELI
LNKNQINTNVLVNNGETVILGGVFEQATSNSQTKVPFLGDLPVVGRLFRKDVKSDDKQELLIFVTPRIVNDTLVRNH

Nucleotide


Download         Length: 2154 bp        

>NTDB_id=540492 I6J48_RS10670 WP_205468440.1 2265258..2267411(+) (pilQ) [Acinetobacter calcoaceticus strain FDAARGOS_1218]
ATGAATCACGTATTCCGTCAGTTTTCTATGGGGGCTGTAGCCATTGCAGTTATGCAGGTTGCATCTGCACAGGTCAGCAT
GACCAATATTGTACCGACACAAATTGCAGGTCAGGGTACAGAAATTAGAGTTATGTTTAATGGTTTACCGCCGCAACCAC
AGGCATATCAACTTGAAAATCCTTCGCGTTTGATTTTGGATTTTAATAAAGCTCAGCAGACTTTAACACAGTCAAAAGTG
GCGATTGGTACCAATGAAGCGAGCTCGGTCGATGTAAGTTCTGACGATCAGCGCTCACGTTTAACTGTAAATTTAAAAGA
GGCGGGTGCATTTACAACGCGTATAGAAGGCAATACTTTTATTTTAAAGATTAATTCAGCTCAAGCGGCTATTAAACCTT
TATCAACAAATACGATCCAACCCCAGGGTGTTTCAAATGTTGGTTTTCAGCGTGGTAGTCAAGGTGAAGGGTTAATTGTT
ATTGATTTATTGGGAAGTAATACCCCTGTTGATGTGCAACAACAAGGCAGTAAAGTTGTAGTGAGAACACTAGGCTCTAA
AATTCCCGCCCATTTAGCTAAACGTTTAAATGTGAACGATTTTGCGACCCCTGTTTCTACCATCGAATCTTATAACGAAA
AAGGCAATGGCGTTATTACGATCCAATCTACTGGTAGCTATGAATATATGGCTTATCAGGCAGAAAATAAACTCACCATT
AGCTTAAAGCGCCCGCAGGACAAAAACGTAACTTCTTTATATAAGACGCCTAATTACTCTGGTAATAAGCTTTCTCTTGA
TTTCCAAGATATTGAAGTTCGTAGGGTTCTACAGTTACTTGCCGATTTTACGGGCATTAATATGGTGGCCGCCGATAGTG
TTCAGGGTAATATTACTTTGCGCTTGAAAGATGTTCCGTGGGATCAGGCACTTGATATTATTTTAAAAACTAAAAATCTG
GATAAACGCAGAAATGGTAACGTTATTTGGATTGCACCTGTTGCAGAGTTGATTAAGGCTGAAGAGGAAGAAGCTAAGGC
TGTTGCTCAAAGTGTCAAACTTGCACCCTTACAAACTGAGTATATTCAACTTAAATATGCGCAAGCTCAGGATATTATGG
GTTTAATTACTCAAGGCTCAAATAATAGTAATGGTTTACAACGGACTTCTGCTGGCGGAACATCAACTTCTACTAATTTA
AATACGGGTGTTGATAGTTTAGGCAATAACGTAGGGAGTTTGTTGAGTCCACGTGGAACAATTACTCAAGATGATCGAAC
CAATACCTTAATTATTAATGATACAGCACAGTCGATTGATCAAATTCGTAAAATGATTGATTTGTTGGATGTGCAAGTCA
AACAGGTCATGGTTGAAGCGCGAATTGTAAGAGCATCTACTTCATTTACCAAGGAGCTTGGCGTTAAGTGGGGAATATTA
TCGCAAGGTGTGAACAGTAATAACAGTTTGTTGGTGGGTGGTAGTGATACGACGCTTTGGAATTTAAGAGAACCAGATGA
TGAAGGTAAATACACGATTGAACGGCCAGATAATTTAAACGTTGATTTGGGTGTTACATCAGCTGGAGCCAGTAGCATAG
CTTTTAGCTTAATTAGTATGTCTGATTTTATGTTGGATTTAGAGTTGTCAGCATTGCAGGCAGATGGCTATGGTGAGGTT
ATTTCAACACCAAAAGTCATGACTGCAGATAAACAACGAGCTAGAGTGGCAACAGGTCAGCAAGTTCCATATCAAACCAC
AACGAATTCTGCTTCTGGTTCAACTGCCACAACTTCTTTTAAAGATGCGCTGTTAAGTTTAGATGTTACGCCAAGTATTA
CACCTGACGGTAAAATTCAAATGAAATTGGATATTTCAAAAGACTCGGTTGCCGATAGTGCTCCTAATGGCGAGTTAATT
TTGAATAAAAATCAGATTAATACCAATGTATTGGTGAATAATGGGGAAACCGTTATTTTGGGTGGAGTATTTGAACAGGC
AACTTCTAATTCACAAACCAAAGTTCCTTTCTTGGGAGACCTGCCTGTAGTTGGCCGTTTATTTAGAAAAGATGTGAAAT
CTGATGATAAACAAGAGTTACTGATTTTCGTTACGCCACGAATTGTTAATGACACTTTGGTGAGAAATCATTAA

Domains

Predicted by InterproScan.

Secretin and TonB N terminus short domain (STN)

(291-333)

Bacterial type II/III secretion system short domain (Secretin_N)

(360-455)

Bacterial type II and III secretion system protein (Secretin)

(551-709)

AMIN domain (AMIN)

(39-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Acinetobacter baumannii D1279779

90.166

100

0.908
  pilQ Acinetobacter baumannii strain A118

90.028

100

0.907
  comQ Acinetobacter baylyi ADP1

75.07

100

0.752
  pilQ Pseudomonas aeruginosa PAK

39.496

99.582

0.393