Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   I6J48_RS10655 Genome accession   NZ_CP070518
Coordinates   2263270..2263911 (+) Length   213 a.a.
NCBI ID   WP_205468439.1    Uniprot ID   -
Organism   Acinetobacter calcoaceticus strain FDAARGOS_1218     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2258270..2268911
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6J48_RS10635 (I6J48_10635) - 2258275..2258607 (+) 333 WP_003653820.1 hypothetical protein -
  I6J48_RS10640 (I6J48_10640) - 2258610..2259434 (+) 825 WP_205468436.1 putative RNA methyltransferase -
  I6J48_RS10645 (I6J48_10645) ponA 2259489..2262050 (-) 2562 WP_205468437.1 penicillin-binding protein PBP1a -
  I6J48_RS10650 (I6J48_10650) pilM 2262212..2263270 (+) 1059 WP_205468438.1 pilus assembly protein PilM Machinery gene
  I6J48_RS10655 (I6J48_10655) pilN 2263270..2263911 (+) 642 WP_205468439.1 PilN domain-containing protein Machinery gene
  I6J48_RS10660 (I6J48_10660) pilO 2263908..2264657 (+) 750 WP_005038271.1 type 4a pilus biogenesis protein PilO Machinery gene
  I6J48_RS10665 (I6J48_10665) pilP 2264668..2265195 (+) 528 WP_003653811.1 pilus assembly protein PilP Machinery gene
  I6J48_RS10670 (I6J48_10670) pilQ 2265258..2267411 (+) 2154 WP_205468440.1 type IV pilus secretin PilQ family protein Machinery gene
  I6J48_RS10675 (I6J48_10675) aroK 2267423..2267992 (+) 570 WP_003653807.1 shikimate kinase AroK -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 23975.36 Da        Isoelectric Point: 6.4518

>NTDB_id=540489 I6J48_RS10655 WP_205468439.1 2263270..2263911(+) (pilN) [Acinetobacter calcoaceticus strain FDAARGOS_1218]
MATINLLPWRDGLREQRKKQFIIFCFGVVVLGITTVFSGWFYLNQKLNDQEQANQLITSTNQSLDQQLKTLNGLQEQRDA
IIERMKLIQGLQSQRPVVVRLVDELVRVTPAAMYLTKFSRTGDKFTIEGKAESPNTVAELLRNLEASPWYRNAFMNSFLA
TEEKKDKTASSLLPRVEDSYGSFIVTVDLGEMGVTTTDDTANTTVSTDKGAVK

Nucleotide


Download         Length: 642 bp        

>NTDB_id=540489 I6J48_RS10655 WP_205468439.1 2263270..2263911(+) (pilN) [Acinetobacter calcoaceticus strain FDAARGOS_1218]
ATGGCAACAATTAATTTACTCCCTTGGCGTGATGGGCTTAGGGAGCAGCGAAAAAAACAATTTATTATTTTTTGTTTTGG
GGTAGTTGTTCTTGGGATCACCACTGTATTTTCTGGGTGGTTTTATTTGAATCAAAAATTAAATGACCAAGAACAAGCTA
ATCAACTCATCACCAGTACAAACCAGAGTCTAGATCAACAACTTAAAACCTTAAATGGTCTGCAAGAACAGCGTGACGCT
ATTATCGAGCGTATGAAACTTATTCAGGGATTACAAAGTCAGCGCCCTGTTGTCGTTCGTTTGGTAGATGAATTGGTACG
TGTTACTCCTGCTGCAATGTATTTGACTAAATTTAGTCGAACTGGAGATAAATTTACCATTGAAGGTAAAGCGGAAAGTC
CAAATACGGTTGCGGAGTTATTACGTAACCTCGAAGCATCACCATGGTATCGCAACGCTTTTATGAACTCTTTCTTGGCG
ACTGAAGAGAAAAAAGATAAGACTGCGAGTTCGCTGCTTCCTCGAGTGGAAGATAGCTATGGCAGTTTTATTGTGACTGT
TGATTTGGGCGAAATGGGGGTGACTACAACAGATGATACCGCCAATACGACTGTAAGTACGGATAAGGGGGCGGTTAAAT
GA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(100-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Acinetobacter baumannii D1279779

87.793

100

0.878
  comN Acinetobacter baylyi ADP1

73.529

95.775

0.704