Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   I6J48_RS10665 Genome accession   NZ_CP070518
Coordinates   2264668..2265195 (+) Length   175 a.a.
NCBI ID   WP_003653811.1    Uniprot ID   A0AAW8QTI7
Organism   Acinetobacter calcoaceticus strain FDAARGOS_1218     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2259668..2270195
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6J48_RS10650 (I6J48_10650) pilM 2262212..2263270 (+) 1059 WP_205468438.1 pilus assembly protein PilM Machinery gene
  I6J48_RS10655 (I6J48_10655) pilN 2263270..2263911 (+) 642 WP_205468439.1 PilN domain-containing protein Machinery gene
  I6J48_RS10660 (I6J48_10660) pilO 2263908..2264657 (+) 750 WP_005038271.1 type 4a pilus biogenesis protein PilO Machinery gene
  I6J48_RS10665 (I6J48_10665) pilP 2264668..2265195 (+) 528 WP_003653811.1 pilus assembly protein PilP Machinery gene
  I6J48_RS10670 (I6J48_10670) pilQ 2265258..2267411 (+) 2154 WP_205468440.1 type IV pilus secretin PilQ family protein Machinery gene
  I6J48_RS10675 (I6J48_10675) aroK 2267423..2267992 (+) 570 WP_003653807.1 shikimate kinase AroK -
  I6J48_RS10680 (I6J48_10680) aroB 2268021..2269103 (+) 1083 WP_205468441.1 3-dehydroquinate synthase -
  I6J48_RS10685 (I6J48_10685) - 2269120..2270001 (+) 882 WP_205468442.1 hypothetical protein -

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 19310.37 Da        Isoelectric Point: 9.0270

>NTDB_id=540491 I6J48_RS10665 WP_003653811.1 2264668..2265195(+) (pilP) [Acinetobacter calcoaceticus strain FDAARGOS_1218]
MKLKQISFSILACLVLVGCDSRIDAVNQQMADIRNQPPQPIDPAPVFTPVPQFNYAAHQLKSPFLPSSLAAELKIMAGKR
VYPNFSRAPQPLESYALESLNMKGSIRNNRGQVLALIQSPDQQIERVQVGNYIGMNQGRITHIGPTQIDLVEIVPDGREG
YVERPRTLVLIGPAP

Nucleotide


Download         Length: 528 bp        

>NTDB_id=540491 I6J48_RS10665 WP_003653811.1 2264668..2265195(+) (pilP) [Acinetobacter calcoaceticus strain FDAARGOS_1218]
ATGAAACTTAAGCAAATTTCTTTTTCTATTTTGGCATGTTTAGTTTTAGTCGGATGTGACTCGAGAATCGACGCTGTAAA
TCAGCAAATGGCAGATATACGTAACCAGCCACCACAGCCGATAGATCCAGCACCTGTTTTCACACCTGTACCACAATTTA
ATTATGCGGCTCATCAGCTAAAGAGTCCATTTTTACCAAGCTCACTTGCTGCTGAGCTCAAAATTATGGCAGGAAAACGG
GTATATCCGAATTTCTCACGTGCACCTCAGCCTCTAGAAAGTTATGCATTAGAATCCTTAAACATGAAAGGAAGCATACG
TAATAACCGTGGGCAAGTACTGGCTCTTATCCAATCACCTGATCAGCAAATTGAGCGAGTGCAGGTGGGGAACTATATCG
GGATGAATCAAGGGCGTATTACCCATATTGGTCCAACTCAGATTGATCTGGTAGAAATTGTCCCCGATGGGCGTGAAGGC
TATGTGGAGAGACCAAGAACCTTAGTGTTAATTGGACCCGCACCCTAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(27-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Acinetobacter baumannii D1279779

89.714

100

0.897
  comL Acinetobacter baylyi ADP1

71.345

97.714

0.697