Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   JWZ98_RS02165 Genome accession   NZ_CP070494
Coordinates   464350..465567 (+) Length   405 a.a.
NCBI ID   WP_205452935.1    Uniprot ID   -
Organism   Methylomonas sp. EFPC1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 459350..470567
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JWZ98_RS02150 (JWZ98_02150) - 459822..460226 (-) 405 WP_205452931.1 hypothetical protein -
  JWZ98_RS02155 (JWZ98_02155) thiC 460562..462430 (+) 1869 WP_205452933.1 phosphomethylpyrimidine synthase ThiC -
  JWZ98_RS02160 (JWZ98_02160) pilB 462632..464347 (+) 1716 WP_171696693.1 type IV-A pilus assembly ATPase PilB Machinery gene
  JWZ98_RS02165 (JWZ98_02165) pilC 464350..465567 (+) 1218 WP_205452935.1 type II secretion system F family protein Machinery gene
  JWZ98_RS02170 (JWZ98_02170) pilD 465643..466509 (+) 867 WP_205452937.1 A24 family peptidase Machinery gene
  JWZ98_RS02175 (JWZ98_02175) coaE 466513..467124 (+) 612 WP_205452938.1 dephospho-CoA kinase -
  JWZ98_RS02180 (JWZ98_02180) zapD 467121..467894 (+) 774 WP_205452939.1 cell division protein ZapD -
  JWZ98_RS02185 (JWZ98_02185) yacG 467894..468097 (+) 204 WP_205452940.1 DNA gyrase inhibitor YacG -
  JWZ98_RS02190 (JWZ98_02190) - 468114..469058 (-) 945 WP_205452941.1 Nudix family hydrolase -
  JWZ98_RS02195 (JWZ98_02195) argJ 469071..470285 (-) 1215 WP_205452943.1 bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ -

Sequence

Protein


Download         Length: 405 a.a.        Molecular weight: 44327.23 Da        Isoelectric Point: 6.2987

>NTDB_id=540195 JWZ98_RS02165 WP_205452935.1 464350..465567(+) (pilC) [Methylomonas sp. EFPC1]
MAKQDEQIEFNWDGFDRQNKKTKGTISAKSEVIARTELRRMGIRVIGIKAKSKPLFGARVQKITPGDIAVFARQLATMLA
AGVPLVQSFDIIGKGHDNASMSELLLSIKADVEGGDTLAQALNRKPLYFDALFCNLVEAGEHAGVLETLLDKIATYKEKT
ESIKKKVKKALTYPIAVLVVAFIVTAILLIFVVPVFEDLFKGFGADLPAFTQFVIELSAWVQEWWWAVIGVIAITAYVFN
YFKKRSKAFNHFLDKTLLKIPVVGMILEKSAIARFARTLSTMSAAGVPLVEALVSVAGACGNILFYEAVMAVRDDVSTGQ
QLKFALETTGMFPNMVVQMVAIGEESGSIDAMLDKVADFYEEEVDNLVDNLSSLMEPIIMVILGILVGGLIVAMYLPIFK
LGAAI

Nucleotide


Download         Length: 1218 bp        

>NTDB_id=540195 JWZ98_RS02165 WP_205452935.1 464350..465567(+) (pilC) [Methylomonas sp. EFPC1]
ATGGCAAAGCAAGACGAACAAATCGAGTTCAATTGGGACGGTTTCGATAGGCAAAACAAGAAAACCAAAGGTACCATCAG
CGCCAAGAGCGAGGTCATTGCGCGCACCGAATTAAGGCGGATGGGCATTCGGGTCATCGGTATCAAAGCCAAGTCCAAGC
CCTTGTTCGGTGCCAGAGTGCAGAAAATCACGCCCGGCGACATCGCGGTGTTCGCCAGGCAGTTGGCGACTATGCTGGCC
GCTGGTGTGCCTTTGGTGCAATCGTTCGATATTATCGGCAAGGGACACGACAACGCCAGTATGTCGGAGTTGCTGTTATC
GATAAAAGCCGATGTGGAAGGTGGCGATACCCTGGCCCAGGCCTTAAACCGTAAGCCACTGTATTTTGATGCGCTGTTCT
GCAATTTGGTCGAAGCCGGCGAACATGCCGGGGTATTGGAAACTTTGCTCGACAAGATTGCCACCTACAAAGAAAAAACC
GAATCGATCAAAAAGAAGGTTAAAAAAGCATTGACCTACCCGATTGCAGTGTTGGTCGTCGCGTTTATCGTCACCGCGAT
TTTGCTGATTTTCGTGGTGCCGGTGTTCGAGGATTTGTTTAAAGGTTTCGGTGCCGACCTTCCGGCATTCACCCAATTTG
TTATTGAGCTGTCGGCCTGGGTGCAGGAATGGTGGTGGGCGGTGATTGGAGTGATCGCCATTACCGCTTACGTGTTTAAT
TATTTTAAAAAACGCTCGAAGGCGTTTAACCATTTTCTCGACAAGACTTTGCTGAAAATCCCGGTTGTCGGGATGATTCT
GGAAAAGTCGGCCATCGCTCGTTTTGCCAGAACACTGTCCACCATGTCTGCGGCTGGCGTACCCTTGGTTGAAGCACTGG
TTTCGGTGGCAGGGGCTTGCGGCAATATTTTATTTTACGAAGCGGTGATGGCTGTGCGCGACGACGTTTCCACCGGCCAG
CAATTGAAGTTTGCTTTGGAGACCACCGGCATGTTTCCGAATATGGTGGTGCAAATGGTGGCGATCGGCGAGGAATCCGG
TTCCATTGATGCGATGCTGGACAAAGTCGCGGACTTTTACGAAGAAGAGGTCGATAACCTGGTCGATAACTTGAGCAGTT
TGATGGAGCCTATCATCATGGTGATCCTGGGTATCCTGGTCGGCGGCTTGATCGTCGCGATGTATCTGCCTATCTTCAAG
TTGGGCGCGGCTATTTAG

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(71-194)

Type II secretion system (T2SS), protein F (T2SSF)

(275-397)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Legionella pneumophila strain ERS1305867

59.296

98.272

0.583
  pilC Pseudomonas stutzeri DSM 10701

57.576

97.778

0.563
  pilC Acinetobacter baumannii D1279779

54.408

98.025

0.533
  pilC Acinetobacter baylyi ADP1

52.696

100

0.531
  pilG Neisseria meningitidis 44/76-A

47.436

96.296

0.457
  pilG Neisseria gonorrhoeae MS11

47.436

96.296

0.457
  pilC Vibrio cholerae strain A1552

42.748

97.037

0.415
  pilC Vibrio campbellii strain DS40M4

40.863

97.284

0.398