Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   JWZ98_RS02170 Genome accession   NZ_CP070494
Coordinates   465643..466509 (+) Length   288 a.a.
NCBI ID   WP_205452937.1    Uniprot ID   -
Organism   Methylomonas sp. EFPC1     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 460643..471509
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JWZ98_RS02160 (JWZ98_02160) pilB 462632..464347 (+) 1716 WP_171696693.1 type IV-A pilus assembly ATPase PilB Machinery gene
  JWZ98_RS02165 (JWZ98_02165) pilC 464350..465567 (+) 1218 WP_205452935.1 type II secretion system F family protein Machinery gene
  JWZ98_RS02170 (JWZ98_02170) pilD 465643..466509 (+) 867 WP_205452937.1 A24 family peptidase Machinery gene
  JWZ98_RS02175 (JWZ98_02175) coaE 466513..467124 (+) 612 WP_205452938.1 dephospho-CoA kinase -
  JWZ98_RS02180 (JWZ98_02180) zapD 467121..467894 (+) 774 WP_205452939.1 cell division protein ZapD -
  JWZ98_RS02185 (JWZ98_02185) yacG 467894..468097 (+) 204 WP_205452940.1 DNA gyrase inhibitor YacG -
  JWZ98_RS02190 (JWZ98_02190) - 468114..469058 (-) 945 WP_205452941.1 Nudix family hydrolase -
  JWZ98_RS02195 (JWZ98_02195) argJ 469071..470285 (-) 1215 WP_205452943.1 bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ -

Sequence

Protein


Download         Length: 288 a.a.        Molecular weight: 31793.01 Da        Isoelectric Point: 6.9119

>NTDB_id=540196 JWZ98_RS02170 WP_205452937.1 465643..466509(+) (pilD) [Methylomonas sp. EFPC1]
MVFATLQQYPLFLISVVCVLGLLVGSFLNVVIYRLPVMMQTGWRRECREYLQLPQDEASEVFNLMLPASHCPSCKTEIKA
YQNIPVISYLLLGGKCAHCGVKIAIRYPLIEAFTGLCSAVVAWHFGFGWALAFALPLTWCLIALSFIDIDQQLLPDSITL
PMLWLGLLLSLFDIYTNSHDAIIGAVAGYLSLWSVYQLFKLLTGKEGMGYGDFKLLALFGAWLGWQYLPLIILLSSLVGA
VIGIAMIVFGKRDAGKPIPFGPYLAMAGWLAMLFGPELNALYLHSAGL

Nucleotide


Download         Length: 867 bp        

>NTDB_id=540196 JWZ98_RS02170 WP_205452937.1 465643..466509(+) (pilD) [Methylomonas sp. EFPC1]
ATGGTTTTTGCCACTCTACAACAATATCCGCTGTTTCTGATCAGCGTCGTTTGCGTGCTGGGCCTTCTGGTCGGCAGCTT
CCTAAACGTGGTTATCTACCGTTTGCCGGTGATGATGCAGACGGGTTGGCGGCGCGAATGCCGGGAATATTTGCAGCTCC
CACAGGATGAAGCAAGCGAAGTGTTCAACCTGATGTTGCCGGCCTCGCATTGCCCGTCGTGCAAAACCGAAATCAAAGCC
TATCAAAACATTCCGGTCATCAGTTACCTGTTGTTGGGCGGCAAATGCGCACATTGCGGGGTGAAAATCGCCATCCGTTA
CCCGCTTATCGAAGCGTTTACCGGTTTATGTTCGGCCGTGGTGGCTTGGCATTTCGGTTTCGGTTGGGCTTTAGCGTTTG
CATTACCTCTGACTTGGTGTTTGATCGCATTGAGTTTTATCGACATCGATCAGCAATTATTACCGGACTCGATCACGCTG
CCGATGCTGTGGCTGGGCCTGTTGTTAAGCCTGTTTGATATATACACGAATAGCCACGACGCGATCATCGGCGCGGTGGC
TGGCTATTTGAGCCTGTGGAGCGTTTATCAACTTTTTAAATTGCTGACCGGCAAGGAAGGGATGGGCTACGGCGATTTCA
AACTGCTGGCGCTGTTCGGTGCCTGGCTGGGCTGGCAATATCTGCCGCTGATTATTCTCCTGTCATCTTTGGTGGGCGCG
GTCATCGGTATCGCGATGATCGTGTTCGGCAAACGCGATGCCGGCAAACCGATACCCTTCGGGCCTTATCTGGCTATGGC
TGGCTGGCTGGCGATGTTGTTCGGGCCGGAGCTGAATGCCTTATATCTGCATAGTGCCGGTTTGTAG

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(19-125)

Type IV leader peptidase family (Peptidase_A24)

(137-244)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio campbellii strain DS40M4

52.65

98.264

0.517
  pilD Acinetobacter baumannii D1279779

55.224

93.056

0.514
  pilD Vibrio cholerae strain A1552

52.128

97.917

0.51
  pilD Acinetobacter nosocomialis M2

54.851

93.056

0.51
  pilD Neisseria gonorrhoeae MS11

54.231

90.278

0.49